PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.K00339.2.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

bHLH

Protein Properties

Length: 406aa MW: 42490.2 Da PI: 6.232

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.K00339.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	218	263	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Migut.K00339.2.p 218 HSIAERLRRERIAERMKGLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 263 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.45E-12	211	267	No hit	No description
SuperFamily	SSF47459	2.09E-16	211	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.964	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-15	215	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-9	218	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-13	219	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MREIGGEFPA MNNLNSLLNL QEIHSHGQLS SSPYFDPTSS NDDFLEQILS SVPSSAAGAA 60 SSFPWADDQS PGLLPHLGDQ SAASKMRHPQ ISNAAAKALM LQQQQQFFSR TLAAANGFRS 120 PPGGDDGLLS IPQDDDDGTS FNSDNPANDA SVKSLFNGFT GSLSQTANEP YHFHHPQNFE 180 APAAAAAAMS QPATSGGGAA GGPRQKVRAR RGQATDPHSI AERLRRERIA ERMKGLQELV 240 PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAGAG ALAPLVTDTS SEGRGGNRTQ 300 TAASSSNNNN NEGMAVAEHQ VAKLMEDDMG SAMQYLQGKG LCLMPISLAT AISTATCHSR 360 NPIIPSSSNH LSAGPISPTM SVHSATVDAG EPSSLMKGPT SVSKP*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MREIGGEFPA MNNLNSLLNL QEIHSHGQLS SSPYFDPTSS NDDFLEQILS SVPSSAAGAA  60
SSFPWADDQS PGLLPHLGDQ SAASKMRHPQ ISNAAAKALM LQQQQQFFSR TLAAANGFRS  120
PPGGDDGLLS IPQDDDDGTS FNSDNPANDA SVKSLFNGFT GSLSQTANEP YHFHHPQNFE  180
APAAAAAAMS QPATSGGGAA GGPRQKVRAR RGQATDPHSI AERLRRERIA ERMKGLQELV  240
PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAGAG ALAPLVTDTS SEGRGGNRTQ  300
TAASSSNNNN NEGMAVAEHQ VAKLMEDDMG SAMQYLQGKG LCLMPISLAT AISTATCHSR  360
NPIIPSSSNH LSAGPISPTM SVHSATVDAG EPSSLMKGPT SVSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	227	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.K00339.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012844131.1	0.0	PREDICTED: transcription factor bHLH69-like isoform X2
Swissprot	Q9ZUG9	2e-81	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0H3Y7K9	1e-157	A0A0H3Y7K9_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.K00339.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-62	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Migut.K00339.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]