PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.K00339.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

bHLH

Protein Properties

Length: 408aa MW: 42719.4 Da PI: 6.232

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.K00339.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	220	265	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Migut.K00339.1.p 220 HSIAERLRRERIAERMKGLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 265 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.46E-12	213	269	No hit	No description
SuperFamily	SSF47459	2.22E-16	213	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.964	215	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-15	217	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.1E-9	220	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-13	221	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MREIGGEFPA MNNLNSLLNL QEIHSHGQLS SSPYFDPTSS NDDFLEQILS SVPSSAAGAA 60 SSFPWADDQS PGLLPHLGDQ SAASKMRHPQ ISNAAAKALM LQQQQQFFSR TLAAANGFRS 120 PPGGDDGLLS IPQDDDDGTS FNSDNPTQAN DASVKSLFNG FTGSLSQTAN EPYHFHHPQN 180 FEAPAAAAAA MSQPATSGGG AAGGPRQKVR ARRGQATDPH SIAERLRRER IAERMKGLQE 240 LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAG AGALAPLVTD TSSEGRGGNR 300 TQTAASSSNN NNNEGMAVAE HQVAKLMEDD MGSAMQYLQG KGLCLMPISL ATAISTATCH 360 SRNPIIPSSS NHLSAGPISP TMSVHSATVD AGEPSSLMKG PTSVSKP*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MREIGGEFPA MNNLNSLLNL QEIHSHGQLS SSPYFDPTSS NDDFLEQILS SVPSSAAGAA  60
SSFPWADDQS PGLLPHLGDQ SAASKMRHPQ ISNAAAKALM LQQQQQFFSR TLAAANGFRS  120
PPGGDDGLLS IPQDDDDGTS FNSDNPTQAN DASVKSLFNG FTGSLSQTAN EPYHFHHPQN  180
FEAPAAAAAA MSQPATSGGG AAGGPRQKVR ARRGQATDPH SIAERLRRER IAERMKGLQE  240
LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAG AGALAPLVTD TSSEGRGGNR  300
TQTAASSSNN NNNEGMAVAE HQVAKLMEDD MGSAMQYLQG KGLCLMPISL ATAISTATCH  360
SRNPIIPSSS NHLSAGPISP TMSVHSATVD AGEPSSLMKG PTSVSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	224	229	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.K00339.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012844130.1	0.0	PREDICTED: transcription factor bHLH82-like isoform X1
Swissprot	Q9ZUG9	4e-80	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0H3Y7K9	1e-158	A0A0H3Y7K9_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.K00339.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-61	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Migut.K00339.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]