PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.J01774.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 484aa    MW: 53831.8 Da    PI: 7.2695
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.J01774.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07236256526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C++f++ G C++Gd C +aHg
  Migut.J01774.1.p 236 ACPDFRK-GACRRGDMCEYAHG 256
                       6******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.209.3E-1913138IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.02E-1817138IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0266090IPR002110Ankyrin repeat
PfamPF127962.6E-860129IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.03360136IPR020683Ankyrin repeat-containing domain
CDDcd002045.53E-1560138No hitNo description
PROSITE profilePS5008811.80895130IPR002110Ankyrin repeat
SMARTSM002489.7E-495127IPR002110Ankyrin repeat
SMARTSM003565.7E-6231257IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5236256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821236258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5264294IPR000571Zinc finger, CCCH-type
SMARTSM0035661266289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MNDDNLPKVE NEDAFQSLLE LAANDDLEAF RTYIDRQPLI VNDVGLWYGR QNGPARMALH  60
HLTPLMVAST YGSLDVVNLI LSRPGIDVNK SSGADKSTAL HCAAAGGSIR TVEIVRALLS  120
AGADPNLTDV NGRKPIDVIF IPPKPWGPQV HYSSLRSMLA AEEYIPLSER EYSVEAVSMP  180
DIKNGIYSTD EFRMFSFKIR PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCVACPDF  240
RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCSR RVCFFAHKQE ELRPLYVSTC  300
SGVASPRSIA ASPSPFTPPM SPSNQNVPAL HLPGSSNLLS SSRLRSSLNA RIFADTDMNA  360
NLPNRSLRPV TLMTHSNLED MFSSDVYSPR HIQHQQQGML SPINATFSSG RMSPRHHHVD  420
SISPMLARSK WGPPEGAVAP DESGKLERCP SFEALNNGEE PDLSWVHSLV RESSQDVKKE  480
ISGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.J01774.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1825740.0AC182574.2 Erythranthe guttata clone MGBa-83E5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828074.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937551e-161C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A022PWY10.0A0A022PWY1_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-138CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]