PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.J01490.1.p | ||||||||
Common Name | MIMGU_mgv1a027047mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 531aa MW: 57453.6 Da PI: 5.9356 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.1 | 6.1e-15 | 157 | 215 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Migut.J01490.1.p 157 IFRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 215 69******************666664477446*************************98 PP | |||||||
2 | AP2 | 47.2 | 5.6e-15 | 258 | 309 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Migut.J01490.1.p 258 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 309 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.41E-22 | 156 | 225 | No hit | No description |
SuperFamily | SSF54171 | 3.73E-17 | 156 | 225 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.808 | 157 | 223 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-15 | 157 | 224 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-29 | 157 | 229 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.8E-12 | 157 | 215 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-5 | 158 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-17 | 258 | 317 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.20E-25 | 258 | 317 | No hit | No description |
Pfam | PF00847 | 6.9E-10 | 258 | 309 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 259 | 317 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-18 | 259 | 317 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-32 | 259 | 323 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-5 | 299 | 319 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 531 aa Download sequence Send to blast |
MDHNMDSSSS NPNWLVFSLS NNSLFQPSFN NSDSGGVADQ ENGSGGGGGG GASQAAASEI 60 DQHHLTVLGG GGGPKLEDFL GGSGGGPMGG DGVVTQFDST MYDDSELKTI AAGFLTGFST 120 PQNDDTQMQL QVVAPPPPRP TPTAKKASEN FGQRTSIFRG VTRHRWTGRY EAHLWDNSCR 180 REGQSRKGRQ VYLGGYDKEE KAARAYDLAA LKYWGPTTTT NFPVSNYEME IEEMQHMTRQ 240 EFVASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY 300 DIAAIKFRGL NAVTNFDMCR YDVRSIASSN LPIGGGTNKP KTSPELLPEN TSNLAITSSE 360 DNLRREDMLS ATSAPLQLNA AASINFGLPI KQDQSSSLWA ALGYHQTTNA KNTSATTLFQ 420 EPHHHGTTLT LQGTTPYSME FNCNNNEGFF DGTGSYNYQH SISNGTTTHD QDSSNGTIHD 480 QDSSNGTTTN EAEEFGNNGN WNVLTPAPVH SFQAAKGNLS YFQTPIFGIE * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.J01490.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837609.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-148 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A022RAQ0 | 0.0 | A0A022RAQ0_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2246 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-138 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.J01490.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|