PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J01148.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | FAR1 | ||||||||
Protein Properties | Length: 259aa MW: 28909.3 Da PI: 6.2443 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77 | 3.8e-24 | 65 | 154 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y++YA+ +GF+vr+ k+++ ++++ ++t++Cskeg ++++ ++++ +++etrtgC+a++ +++g+w+v+++++eHnHe+ap Migut.J01148.3.p 65 LYCDYAQALGFNVRRGKQYYFMGTKRVRSKTYCCSKEGAKDDKADTSSGVGYKKPETRTGCRAMISFACDESGQWKVSRFVKEHNHEMAP 154 69*****************************************999888889***********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.1E-21 | 65 | 154 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MENSGFDLDH HEAICGDSDE EGVTRLRSGG EVVDVNEGQD EAHILDLEKK LLEQVVYSEE 60 EAYMLYCDYA QALGFNVRRG KQYYFMGTKR VRSKTYCCSK EGAKDDKADT SSGVGYKKPE 120 TRTGCRAMIS FACDESGQWK VSRFVKEHNH EMAPPYAKPL VKSGQAILAA NVYGSGGALE 180 SLSEHEKIRE LSLQLAIAKN RAETSEKQAA TYKRQLHMIV GHIEEHNQSL SNKIQKVLNN 240 VNELESKDGL RYSDNGCR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J01148.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012846482.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A4D8YWH6 | 1e-154 | A0A4D8YWH6_SALSN; Uncharacterized protein | ||||
STRING | Migut.J01148.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 6e-29 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.J01148.3.p |