PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.J01148.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

FAR1

Protein Properties

Length: 287aa MW: 32135.1 Da PI: 6.0581

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.J01148.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.7	4.7e-24	93	182	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y++YA+ +GF+vr+ k+++ ++++ ++t++Cskeg ++++ ++++ +++etrtgC+a++ +++g+w+v+++++eHnHe+ap Migut.J01148.1.p 93 LYCDYAQALGFNVRRGKQYYFMGTKRVRSKTYCCSKEGAKDDKADTSSGVGYKKPETRTGCRAMISFACDESGQWKVSRFVKEHNHEMAP 182 69***************************************999888889*********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-21	93	182	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MMYSEIISEF PRRCDLSSIP NQITISVIME NSGFDLDHHE AICGDSDEEG VTRLRSGGEV 60 VDVNEGQDEA HILDLEKKLL EQVVYSEEEA YMLYCDYAQA LGFNVRRGKQ YYFMGTKRVR 120 SKTYCCSKEG AKDDKADTSS GVGYKKPETR TGCRAMISFA CDESGQWKVS RFVKEHNHEM 180 APPYAKPLVK SGQAILAANV YGSGGALESL SEHEKIRELS LQLAIAKNRA ETSEKQAATY 240 KRQLHMIVGH IEEHNQSLSN KIQKVLNNVN ELESKDGLRY SDNGCR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.J01148.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012846482.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A4D8YWH6	1e-153	A0A4D8YWH6_SALSN; Uncharacterized protein
STRING	Migut.J01148.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14517	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-28	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Migut.J01148.1.p