PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.J00632.1.p | ||||||||
Common Name | LOC105958356, LOC105958359, MIMGU_mgv1a025064mg, MIMGU_mgv1a026811mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 134aa MW: 15117.3 Da PI: 7.9125 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.4 | 3.2e-35 | 11 | 111 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +Ca+Ck++rrkC ++Cvla+yfpae++ +f+nv +lFG++n lk+lk+++eeer+++++sl++eA++r++ Pv+G ++v +kl+ ++e++++e Migut.J00632.1.p 11 PCASCKHQRRKCDQNCVLAKYFPAERSDDFENVYHLFGMQNTLKILKSVEEEERDATIESLIMEAKMRLEHPVHGHFSVARKLSIEIEKTEKE 103 7******************************************************************************************** PP DUF260 94 lallkeel 101 l+ +++++ Migut.J00632.1.p 104 LEIVRQKI 111 ***99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.159 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.5E-33 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MANAVPVAQK PCASCKHQRR KCDQNCVLAK YFPAERSDDF ENVYHLFGMQ NTLKILKSVE 60 EEERDATIES LIMEAKMRLE HPVHGHFSVA RKLSIEIEKT EKELEIVRQK IHICKGADNR 120 AGPSTRGGQS DQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-21 | 2 | 111 | 2 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-21 | 2 | 111 | 2 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.J00632.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837818.1 | 2e-96 | PREDICTED: LOB domain-containing protein 7-like | ||||
Refseq | XP_012837821.1 | 2e-96 | PREDICTED: LOB domain-containing protein 7-like | ||||
TrEMBL | A0A022RAV2 | 6e-95 | A0A022RAV2_ERYGU; Uncharacterized protein | ||||
STRING | Migut.J00628.1.p | 1e-95 | (Erythranthe guttata) | ||||
STRING | Migut.J00632.1.p | 1e-95 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2866 | 17 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 7e-24 | LOB domain-containing protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Migut.J00632.1.p |
Entrez Gene | 105958356 | 105958359 |