PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.J00622.1.p

Common Name

LOC105966438, MIMGU_mgv1a026380mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 134aa MW: 15041.2 Da PI: 6.8613

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.J00622.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.2	8e-31	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkC ++C+la+yf ae++ +++nv +lFG++n lk+lk+++eeer+++++sl++eA++r++ Pv+ ++v ++l+ ++e++++e Migut.J00622.1.p 11 ACAACKHQRRKCDQNCALAKYFLAERSDDLENVYHLFGMHNTLKILKSVEEEERDATTESLIMEAKMRLEHPVHDHFSVARNLSVEIEKTEKE 103 7******************************************************************************************** PP DUF260 94 lallkee 100 l+ + ++ Migut.J00622.1.p 104 LEIVCQK 110 *998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.279	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-28	11	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MANAVPVAQK ACAACKHQRR KCDQNCALAK YFLAERSDDL ENVYHLFGMH NTLKILKSVE 60 EEERDATTES LIMEAKMRLE HPVHDHFSVA RNLSVEIEKT EKELEIVCQK IHICKGADNR 120 VGPSTRGGQP DQP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-16	2	105	2	105	LOB family transfactor Ramosa2.1
5ly0_B	3e-16	2	105	2	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.J00622.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012846445.1	3e-96	PREDICTED: LOB domain-containing protein 7-like
TrEMBL	A0A022S1R8	8e-95	A0A022S1R8_ERYGU; Uncharacterized protein
STRING	Migut.J00622.1.p	1e-95	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2866	17	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	1e-24	LOB domain-containing protein 7

Link Out ? help Back to Top
Phytozome	Migut.J00622.1.p
Entrez Gene	105966438