PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.J00119.1.p

Common Name

LOC105952746, MIMGU_mgv1a022683mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

GRAS

Protein Properties

Length: 494aa MW: 56066.2 Da PI: 4.406

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.J00119.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	147.5	1.3e-45	135	492	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 +lL + eav++g+++l + +++ +++ +sp+g++++R+a + + ++r l+ e+ + ++ a++++++ P +f+ Migut.J00119.1.p 135 LHLLRAYGEAVENGEKKLSEVIVKSINNKSSPQGNTVERVAYNLFQSGESRGEF--------LR--EE---SIKNIEVAFNVLYQSLPNGRFA 214 68999999*******************************9877766666544........22..22...35566678899******* PP GRAS 95 hltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlv 182 h++aN+aIle++ ++ ++ i+Dfd+++G+QWp+L++aL++ ++ ++iT v+ +e++ s + e t++rL A+++gv ++++ Migut.J00119.1.p 215 HFAANSAILESIPKDaVAIQIVDFDMGEGIQWPPLIEALSK--GKVKLMKITSVKLEEESestsSCWSFEGTKKRLLAHARQFGVALQIEE-- 303 ********9986899*****************9..77789**998877777677789****************98.. PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk...vvvvveqe.adhnsesFlerflealeyysalfdsl 271 +r+ed+ e + vk+gE ++ n+ + l +++++ s +s +e+Lk+ k++ ++ ++ + + e + + ++F+ f++ +++y a+f+sl Migut.J00119.1.p 304 -RRIEDFASE-MMVKSGEWVVYNCTVGLPHMVRR-RSRRS-VNEFLKVAKEMLANyggILNIGDGEeVGESLNNFASYFANFVRHYQAVFESL 392 .8*555.55**************944.44444.69*****987555777777553777889**************** PP GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlg 361 e + p e+r+ +Er +l++ + + + e ++++ + re e++ ++ ++s+++ ++ak ++++ + s r+e +++++vl Migut.J00119.1.p 393 EGNCPVYLaEARTAMERLFLAPFMCPLAWFQDWE---EMRKSGVFRE--ESSWLEGRKISQENLAEAKVMVNEREsSYSVRIEkLRENEMVLQ 480 987669***********999999888...6666666666..45668899**************4444555533599* PP GRAS 362 WkdrpLvsvSaW 373 Wk+ pLv vS W Migut.J00119.1.p 481 WKGTPLVRVSTW 492 ********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	19.712	108	471	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.6E-43	135	492	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MMQPELLLPS WPIFDFCEID GFDFSSSFAS PEEYSSEISS KSNLRNTFQD EFFDLENLGD 60 EIHICSAMEE ICEWINGDET EGNSSSPITI EEDEWSPSLC QESSRDSTLL PIHITDMSLV 120 FPGDDVTVDD HLSLLHLLRA YGEAVENGEK KLSEVIVKSI NNKSSPQGNT VERVAYNLFQ 180 SGESRGEFLR EESIKNIEVA FNVLYQSLPN GRFAHFAANS AILESIPKDA VAIQIVDFDM 240 GEGIQWPPLI EALSKGKVKL MKITSVKLEE ESESTSSCWS FEGTKKRLLA HARQFGVALQ 300 IEERRIEDFA SEMMVKSGEW VVYNCTVGLP HMVRRRSRRS VNEFLKVAKE MLANYGGILN 360 IGDGEEVGES LNNFASYFAN FVRHYQAVFE SLEGNCPVYL AEARTAMERL FLAPFMCPLA 420 WFQDWEEMRK SGVFREESSW LEGRKISQEN LAEAKVMVNE RESSYSVRIE KLRENEMVLQ 480 WKGTPLVRVS TWI*

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MMQPELLLPS WPIFDFCEID GFDFSSSFAS PEEYSSEISS KSNLRNTFQD EFFDLENLGD  60
EIHICSAMEE ICEWINGDET EGNSSSPITI EEDEWSPSLC QESSRDSTLL PIHITDMSLV  120
FPGDDVTVDD HLSLLHLLRA YGEAVENGEK KLSEVIVKSI NNKSSPQGNT VERVAYNLFQ  180
SGESRGEFLR EESIKNIEVA FNVLYQSLPN GRFAHFAANS AILESIPKDA VAIQIVDFDM  240
GEGIQWPPLI EALSKGKVKL MKITSVKLEE ESESTSSCWS FEGTKKRLLA HARQFGVALQ  300
IEERRIEDFA SEMMVKSGEW VVYNCTVGLP HMVRRRSRRS VNEFLKVAKE MLANYGGILN  360
IGDGEEVGES LNNFASYFAN FVRHYQAVFE SLEGNCPVYL AEARTAMERL FLAPFMCPLA  420
WFQDWEEMRK SGVFREESSW LEGRKISQEN LAEAKVMVNE RESSYSVRIE KLRENEMVLQ  480
WKGTPLVRVS TWI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-17	149	492	18	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.J00119.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012831780.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A022RNA2	0.0	A0A022RNA2_ERYGU; Uncharacterized protein
STRING	Migut.J00119.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5361	19	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	7e-26	GRAS family protein

Link Out ? help Back to Top
Phytozome	Migut.J00119.1.p
Entrez Gene	105952746