PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.I00751.2.p | ||||||||
Common Name | LOC105975959, MIMGU_mgv1a026038mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | FAR1 | ||||||||
Protein Properties | Length: 624aa MW: 72325.2 Da PI: 5.3114 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.2 | 5.5e-23 | 61 | 140 | 2 | 87 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fYn YAk+ GF vr+s++ ++ +++e ++++f Cs g++++++ + r+r+etrtgC a++k +++++++w+++++eleHnH Migut.I00751.2.p 61 FYNCYAKQQGFGVRVSNTWYR-KSKERYRAKFSCSSAGFKKKTEAN-----RPRPETRTGCPAMIKFRLMDNHRWRIIEMELEHNH 140 9***************99997.66779**************98877.....*********************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.6E-20 | 61 | 140 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.1E-20 | 259 | 351 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.285 | 539 | 575 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.2E-5 | 550 | 577 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 3.4E-4 | 550 | 573 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MDEFSLNTEP ACDDEAEEFE IDGECAMTEY VGQTGNILRG ENPLPPAVGM EFDSYDDVYY 60 FYNCYAKQQG FGVRVSNTWY RKSKERYRAK FSCSSAGFKK KTEANRPRPE TRTGCPAMIK 120 FRLMDNHRWR IIEMELEHNH LTGPAGGSFC KSRRITDLGS KRPLSIDGSE EVCKIKLFRT 180 LVIDEEDDGG ETRINIDGGD DKLKLKQGDA REMLDFFTRM QLTSPGFFYV MDFNEKGCLR 240 NVFWAETRCR AAYGYFGDVV FFDTKSLTEN YEVPLVVFAC INHHMQMVPL GCGLVSSQSV 300 ESFIWLFRAW ITYMVGRAPQ TIITGPCKAL QSAVSDVFPR AFHCLSLTNI KEKIASEFDP 360 AFTRVVYGSL RVDEFELAWE DMVKTHGLEN HKWLQTLYED RKRWVPLYLK EVFLAGLFPV 420 KENERLSSPF EEYLSPQTSL KEFLCTYERA LLEIEQRETL SDMESTNNSS CALKSRFSFE 480 LQLSKLYTNE IFKKFQDEIE GMYSCFSVRE ISTDSSSLTY YIVKEDILVE QNHRLTREFE 540 VMYNTCDSEI LCACGLFNFR GYLCRHALSV INETGLEETP PRYILARWRK DIGRDYIFNH 600 GLWMKGGDRT IDTSLLRGRW MRY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.I00751.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856675.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A022Q368 | 0.0 | A0A022Q368_ERYGU; Uncharacterized protein | ||||
STRING | Migut.I00751.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-180 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Migut.I00751.2.p |
Entrez Gene | 105975959 |