PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.I00113.1.p

Common Name

LOC105959813, MIMGU_mgv1a011235mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

LBD

Protein Properties

Length: 289aa MW: 32670.3 Da PI: 5.8754

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.I00113.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	112.4	3.1e-35	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rr+C+++C lap fpa+qpk f+nvh+lFG+++v++llk+l ++++++a++s+ ++A +r + Pv G+v+ i++l+ +++ l++e Migut.I00113.1.p 10 ACAACKFQRRRCTAECLLAPFFPADQPKMFQNVHRLFGVKHVQNLLKELAPDQKPIAIKSIKFHAAMRDKHPVLGCVAEIQDLEYKIHLLQEE 102 7******************************************************************************************** PP DUF260 94 lallkee 100 l+l+ ++ Migut.I00113.1.p 103 LHLVLHH 109 *998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.678	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-33	10	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MTLKSGTGQA CAACKFQRRR CTAECLLAPF FPADQPKMFQ NVHRLFGVKH VQNLLKELAP 60 DQKPIAIKSI KFHAAMRDKH PVLGCVAEIQ DLEYKIHLLQ EELHLVLHHL NYYRHQQHHH 120 HHQQQRDVSS SMEDHFVSQL QLGVGPPGNN AAAAAAPPPP PPPPMQYDNY DDDIHMDSLK 180 QDVVIDDSFW MQQNYCYDDN NNNTNNNFSI NINNNDSNSN SMVVQSELST SAHDYGEMHP 240 FFENIDDTQS YIGSSFEPSE RDSRQSIEQV AENELKSAAA CFSLTSVN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-27	6	103	7	104	LOB family transfactor Ramosa2.1
5ly0_B	3e-27	6	103	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.I00113.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012839427.1	0.0	PREDICTED: LOB domain-containing protein 27
TrEMBL	A0A022R6N3	0.0	A0A022R6N3_ERYGU; Uncharacterized protein
STRING	Migut.I00113.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	9e-38	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	Migut.I00113.1.p
Entrez Gene	105959813