PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.I00100.1.p

Common Name

LOC105959826, MIMGU_mgv1a011907mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

bHLH

Protein Properties

Length: 268aa MW: 28377.6 Da PI: 6.6854

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.I00100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.8e-11	150	197	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Migut.I00100.1.p 150 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 197 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.24E-10	144	201	No hit	No description
SuperFamily	SSF47459	8.11E-18	144	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-18	146	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	146	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-8	150	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	152	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDPPLVNEAS FTAAANPSSY SLAGLLSFPT SGGGGGVGGG LGLRIGSFGG VGGDGSLEAA 60 STVTEHGGGN GGAKRRRDVS TSCPNQDLNE SNAKRTKVFG SSEENNSNSK TEPQAAYSGS 120 SIKPIEEKNK PEPPKDYIHV RARRGQATDS HSLAERARRE KISERMKILQ DLVPGCNKVI 180 GKALVLDEII NYIQSLQHQV EFLSMKLEAV NSRLNPSIEV FSSKDLAPPA FDANGMIYGP 240 QTPAEYGERS QAEWLHMQVG SGFERAT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.I00100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012839440.1	0.0	PREDICTED: transcription factor bHLH79
Swissprot	Q9LV17	2e-78	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A022R864	0.0	A0A022R864_ERYGU; Uncharacterized protein
STRING	Migut.I00100.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	9e-69	BIG PETAL P

Link Out ? help Back to Top
Phytozome	Migut.I00100.1.p
Entrez Gene	105959826

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]