PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H02460.1.p | ||||||||
Common Name | LOC105964992, MIMGU_mgv1a008130mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 385aa MW: 41749.8 Da PI: 6.4287 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.1e-20 | 187 | 236 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa+a+++a+++++g Migut.H02460.1.p 187 RYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEAAAAAYDEAALRFRG 236 7********.**********76....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.50E-21 | 187 | 246 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.8E-32 | 187 | 245 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.106 | 187 | 244 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-22 | 187 | 245 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.9E-13 | 187 | 236 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-36 | 187 | 250 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 188 | 199 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 210 | 226 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MCVFNKVANP RDEFYPKKRG EIINNVNSEL FDHGGGRENR VLDSLVSPMF SGFNREQEMS 60 AMVSALAHVV AGDEGGAAAA AAVGGSSSSS SACKRRRDEE PNTQYYSEKS VARVCRPPPP 120 PYADSSIGSS NFRQEGGGST SMVRTSIITS TEASAVYTYT PTLYHHPQQN SINNNESPPA 180 SRINTRRYRG VRQRPWGKWA AEIRDPYKAA RVWLGTFDTA EAAAAAYDEA ALRFRGNKAK 240 LNFPENVKLL HHPHPPSEAA AGPVVRGGGD GGDDRFQWLR SDFERQLYNV GYDYNNSNNG 300 SLSSSEMMTP PSSSGVVMTL DDIQRQDGLI STMQYPPPET SYPLYYPAAQ PPEIDFRPEG 360 SHSSGGGGGG DFSWTDSGHQ TSSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-22 | 188 | 247 | 6 | 66 | ATERF1 |
3gcc_A | 4e-22 | 188 | 247 | 6 | 66 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H02460.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012844951.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A022QUZ2 | 0.0 | A0A022QUZ2_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 4e-29 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H02460.1.p |
Entrez Gene | 105964992 |