PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H02327.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HD-ZIP
Protein Properties Length: 310aa    MW: 35514.2 Da    PI: 4.4785
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H02327.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.4e-194497356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      k+++++ +q+++Le+ Fe ++++  e++ +LA +lgL+ rqV vWFqNrRa++k
  Migut.H02327.1.p 44 KKRRLSLHQVKALEKNFEVENKLEPERKVKLAGELGLQPRQVAVWFQNRRARWK 97
                      5568999**********************************************9 PP
2HD-ZIP_I/II123.51e-3944135293
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       kkrrls +qvk+LE++Fe e+kLeperKv+la eLglqprqvavWFqnrRAR+ktkqlE+dy  Lk+  dalk++ e+L++++e+L +e+ke
  Migut.H02327.1.p  44 KKRRLSLHQVKALEKNFEVENKLEPERKVKLAGELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKADRDALKHKYEKLRQDNESLMNEIKE 135
                       9***************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-1935101IPR009057Homeodomain-like
PROSITE profilePS5007116.7633999IPR001356Homeobox domain
SMARTSM003897.5E-1742103IPR001356Homeobox domain
PfamPF000464.8E-164497IPR001356Homeobox domain
CDDcd000865.74E-1644100No hitNo description
Gene3DG3DSA:1.10.10.602.2E-1946105IPR009057Homeodomain-like
PRINTSPR000312.1E-57079IPR000047Helix-turn-helix motif
PROSITE patternPS0002707497IPR017970Homeobox, conserved site
PRINTSPR000312.1E-57995IPR000047Helix-turn-helix motif
PfamPF021832.8E-1399140IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKMSICPNST VDVEENNPMY TRDFQTMLDE EGCVEEYSGH VSDKKRRLSL HQVKALEKNF  60
EVENKLEPER KVKLAGELGL QPRQVAVWFQ NRRARWKTKQ LERDYGLLKA DRDALKHKYE  120
KLRQDNESLM NEIKELKMKL NEDGKPDTKV SVKDENLVVS ETEEKSKLET EYDSEAAMEV  180
NFESFNGDEN EEIGCASFFC DLKDGSSDSD SSAILNDYNS PRHQFLDIHS GGSSSSMNTM  240
SFQFSDSGNK EISASILGDG QKMCQLAQMQ FVKIEEHDFF GDEESDNCSN LFCDDQAPTL  300
HWYSSHDWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19199RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H02327.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845132.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1
TrEMBLA0A022QSV20.0A0A022QSV2_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.14e-57homeobox protein 16