PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H02298.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25546.1 Da    PI: 6.7946
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H02298.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.41.6e-27959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ien   rqvtfskRr g++KKAeELS+LCda+v +iifsstgkl+eyss
  Migut.H02298.1.p  9 KKIENVAARQVTFSKRRRGLFKKAEELSILCDADVGLIIFSSTGKLFEYSS 59
                      68***********************************************96 PP
2K-box23.91.7e-09941612188
             K-box  21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                       ++ L+ke+ +  +++R++ Ge+L+ L ++eL++Le+ Le +l+++ +kK+   ++ +ee +   +++ 
  Migut.H02298.1.p  94 ISWLNKEVAERSQQLRRMRGEELDGLGIEELHRLEKSLELGLNRVMEKKKMQGRQLMEENRLLRQQVA 161
                       566788888888999*********************************99877777776666655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.702161IPR002100Transcription factor, MADS-box
CDDcd002654.61E-39275No hitNo description
PRINTSPR004041.2E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-30374IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.48287180IPR002487Transcription factor, K-box
PfamPF014866.1E-892162IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAREKIKIKK IENVAARQVT FSKRRRGLFK KAEELSILCD ADVGLIIFSS TGKLFEYSST  60
SMKEIVERHN LHSKNLDKLE QPSLELQLVE DSNISWLNKE VAERSQQLRR MRGEELDGLG  120
IEELHRLEKS LELGLNRVME KKKMQGRQLM EENRLLRQQV ADMENNGGGS KTRITESEKR  180
VYYEEGQSSE SVANVCNSAG PPQDYYDCSD TSLKLELVYF IP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19169169MEF2C
5f28_B3e-19169169MEF2C
5f28_C3e-19169169MEF2C
5f28_D3e-19169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H02298.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1722410.0KP172241.1 Erythranthe guttata short vegetative phase 254 (SVP254) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012845116.11e-146PREDICTED: MADS-box protein JOINTLESS-like
SwissprotQ9FUY61e-87JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A022QUI51e-137A0A022QUI5_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9382377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-81MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]