PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.H01539.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 408aa MW: 45184.8 Da PI: 6.389 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.3 | 8.4e-06 | 296 | 334 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A++YIk L Migut.H01539.1.p 296 VRKEKMGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKFL 334 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.22 | 285 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.57E-6 | 295 | 339 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-8 | 295 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-11 | 295 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0042631 | Biological Process | cellular response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:2000214 | Biological Process | regulation of proline metabolic process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 408 aa Download sequence Send to blast |
MAEDFQGGVC GGGNWWPPAN PSRIHLFGSS PCSSEFISDA AGIFGINNYH DHHSLITDMQ 60 TTPANSFTSA DDSPAGSASD DGAAVSIVLQ AKPHLNGNLF SKDWNQDFLR SEQDYSNMMN 120 TNFCDDSAIN NSCNINIQTS LNNNYLNNLP LNSASYSYTS SLLQNLFDID SPQPQQYLLH 180 NNNMQEHNNN NNYSSSPNNY PMINNSSEIS AKENHLEFTN NTPFWNAMAE ASNNVRPTTS 240 FIPLNQVIAS KKPNPNNFNT KHHNKEGRKL DSVAKNEPAT KRPRIETPSP LPTFKVRKEK 300 MGDRITALQQ LVSPFGKTDT ASVLHEAIDY IKFLHDQVSV LSSPYLNSKP PPPHRHQAAN 360 KTKDEERLTQ LDLKSRGLCL VPISSTFPIA SETTSDFWTP TFGGSFR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.H01539.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012842014.1 | 0.0 | PREDICTED: transcription factor bHLH112 isoform X1 | ||||
TrEMBL | A0A022R550 | 1e-138 | A0A022R550_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H01539.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA860 | 24 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61660.1 | 2e-58 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.H01539.1.p |