PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H01491.1.p | ||||||||
Common Name | MIMGU_mgv1a022013mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HSF | ||||||||
Protein Properties | Length: 205aa MW: 23512.1 Da PI: 10.1113 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.7 | 1.5e-32 | 24 | 129 | 2 | 101 |
HHHHHHHHHCTG...............GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSE CS HSF_DNA-bind 2 Flkklyeilede...............elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiw 79 Fl+k+y++le+e e +++sw+++gn fvv+ + +f++ +LpkyFkh+nf+SF+RQLn+YgFkk+ +++ w Migut.H01491.1.p 24 FLSKTYDLLEEEeicgggrgggaahgvERLRIVSWNSEGNGFVVWSPADFSEAMLPKYFKHNNFSSFIRQLNTYGFKKTASKR---------W 107 9*********888999999999999988899************************************************9988.........* PP EEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 80 eFkhksFkkgkkellekikrkk 101 eF+h++Fk+g+++ll +i rkk Migut.H01491.1.p 108 EFQHEKFKRGQRHLLAEIGRKK 129 ********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.4E-34 | 19 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.4E-40 | 20 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 6.67E-25 | 22 | 128 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-29 | 24 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-9 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-9 | 90 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MATTPPHAPE PAGMTRKIKC PAPFLSKTYD LLEEEEICGG GRGGGAAHGV ERLRIVSWNS 60 EGNGFVVWSP ADFSEAMLPK YFKHNNFSSF IRQLNTYGFK KTASKRWEFQ HEKFKRGQRH 120 LLAEIGRKKC DPSGFPPFLK AKYCSKNKSN NNNNNTKNMV MLMEENNKLR RERKDLEMQI 180 SHFKNLEMKL LECLSQYTTM PLLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdk_A | 4e-17 | 20 | 128 | 7 | 110 | Heat shock factor protein 2 |
5hdk_B | 4e-17 | 20 | 128 | 7 | 110 | Heat shock factor protein 2 |
5hdk_C | 4e-17 | 20 | 128 | 7 | 110 | Heat shock factor protein 2 |
5hdk_D | 4e-17 | 20 | 128 | 7 | 110 | Heat shock factor protein 2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H01491.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:7948881}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022886333.1 | 1e-87 | heat stress transcription factor B-2a-like isoform X1 | ||||
Swissprot | P41151 | 2e-36 | HFA1A_ARATH; Heat stress transcription factor A-1a | ||||
TrEMBL | A0A022RWP3 | 1e-151 | A0A022RWP3_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H01491.1.p | 1e-152 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10707 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 4e-37 | heat shock factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H01491.1.p |
Publications ? help Back to Top | |||
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