PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.H01462.1.p | ||||||||
Common Name | LOC105951445, MIMGU_mgv1a005815mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 470aa MW: 52638.9 Da PI: 5.9365 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 401.9 | 1.4e-123 | 205 | 424 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlq...dycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsaflg kcalwdc+rpa g ew q dycss+ha +a eg pg pv+rp+gi+lkd++lf+al ak +gk+vgipecegaat+kspw Migut.H01462.1.p 205 PPPSAFLGAKCALWDCPRPALGLEWSQnpdDYCSSYHAGIAPGEGYPGRPPVIRPGGIGLKDNMLFSALGAKSRGKDVGIPECEGAATSKSPW 297 89***********************975558************************************************************** PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalaly 183 na+elfdl++l+getirewlffdkprrafesg rkqrslpdy+grgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyein +d +aly Migut.H01462.1.p 298 NAPELFDLMVLDGETIREWLFFDKPRRAFESGTRKQRSLPDYNGRGWHESRKQVMNEFGGLKRSYYMDPQPMENFEWHLYEYEINRYDMCALY 390 ********************************************************************************************* PP VOZ 184 rlelklvdekksakgkvskdsladlqkklgrlta 217 rle+k vd++k++kgk+ +ds++dlqk++grl+a Migut.H01462.1.p 391 RLEVKRVDGRKTPKGKMGNDSVVDLQKQMGRLNA 424 *******************************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 470 aa Download sequence Send to blast |
MGKGSKSGAC KSASHNLFKD RAKNRVDDLQ GMFGDLQSAR KESRSIDVAL LEEQVHQMLR 60 EWKAELNEPS PASSLHQQGG SLGSFSSEIC RLLKFYEEED DATSLLAPPK PEPGVPKVVN 120 GFTSREGFNM SNNNSHEQGF PLLDQCKNTA MGPTTTIETN NMCLEKQCQT NFPSFDFNQE 180 IGPHYFSGFD ETTTQFPIYQ QSIPPPPSAF LGAKCALWDC PRPALGLEWS QNPDDYCSSY 240 HAGIAPGEGY PGRPPVIRPG GIGLKDNMLF SALGAKSRGK DVGIPECEGA ATSKSPWNAP 300 ELFDLMVLDG ETIREWLFFD KPRRAFESGT RKQRSLPDYN GRGWHESRKQ VMNEFGGLKR 360 SYYMDPQPME NFEWHLYEYE INRYDMCALY RLEVKRVDGR KTPKGKMGND SVVDLQKQMG 420 RLNAEFPNDG NQRIVKARSK ANTGEGFDYP RGGAPYDYLV DNNNGYYLT* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.H01462.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830329.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Refseq | XP_012830330.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Refseq | XP_012830331.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A022RUE1 | 0.0 | A0A022RUE1_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H01462.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2818 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-165 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.H01462.1.p |
Entrez Gene | 105951445 |
Publications ? help Back to Top | |||
---|---|---|---|
|