PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00878.1.p
Common NameLOC105961648, MIMGU_mgv1a022965mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 291aa    MW: 32417.2 Da    PI: 7.4445
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00878.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl
  Migut.H00878.1.p 14 RGPWTPEEDAKILAYVASHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61
                      89********************************************97 PP
2Myb_DNA-binding52.88.9e-1768110246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++T+eE+e +++++k  G++ W++Ia++++ gRt++++k++w++
  Migut.H00878.1.p  68 DNFTPEEEECILELHKTVGSR-WSLIAKRLP-GRTDNDVKNYWNT 110
                       68*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.679965IPR017930Myb domain
SuperFamilySSF466898.98E-3211108IPR009057Homeodomain-like
SMARTSM007175.2E-151363IPR001005SANT/Myb domain
PfamPF002491.2E-161461IPR001005SANT/Myb domain
CDDcd001673.92E-121661No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129420.38166116IPR017930Myb domain
SMARTSM007173.7E-1666114IPR001005SANT/Myb domain
PfamPF002492.0E-1569110IPR001005SANT/Myb domain
CDDcd001674.63E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRPPCCDKS NVKRGPWTPE EDAKILAYVA SHGIGNWTLV PQKAGLNRCG KSCRLRWTNY  60
LRPDLKHDNF TPEEEECILE LHKTVGSRWS LIAKRLPGRT DNDVKNYWNT KLKKKLAKMG  120
IDPVTHKPFS QVFSEYGKIS CFPINTNTNK NPFLKPESNN TSMGYDIMQR QPYFSSSSNG  180
VMRFGLGQSH TCGPSQVQSV PASPFELSNE CVLGDYLSSS NYEAAQVQEE GHIRKTSVEN  240
SGNYSCHGNY SGASSSSSFA ADSSFVEAIL AHDSEMRLQF LDILDDDYGY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00878.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012841337.10.0PREDICTED: myb-related protein 308
SwissprotQ9LSI75e-77MYB35_ARATH; Transcription factor MYB35
TrEMBLA0A022R5M10.0A0A022R5M1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-77MYB family protein
Publications ? help Back to Top
  1. Tsugama D, et al.
    A putative MYB35 ortholog is a candidate for the sex-determining genes in Asparagus officinalis.
    Sci Rep, 2017. 7: p. 41497
    [PMID:28176806]
  2. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  3. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]