PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.H00739.1.p | ||||||||
Common Name | MIMGU_mgv1a021647mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 156aa MW: 17696.5 Da PI: 10.7484 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.1 | 1.5e-20 | 24 | 72 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie s qvtfskRr g++ KA+ELSvLC+ae+a+++ s+ +k++ y Migut.H00739.1.p 24 KKIEKRSSLQVTFSKRRMGLFRKASELSVLCGAEIAILVQSPANKIFSY 72 68999****************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.455 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.8E-26 | 16 | 86 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-30 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.76E-32 | 17 | 92 | No hit | No description |
PRINTS | PR00404 | 2.6E-19 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-22 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-19 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-19 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MENINKGLTT CKKKTMGRRK IDIKKIEKRS SLQVTFSKRR MGLFRKASEL SVLCGAEIAI 60 LVQSPANKIF SYGHPSVETL FHRYQTGGSS SAALSIIPYR EDGRSKYDEA VRKLEIVKRS 120 TKQESSSSSI TRFWWDEPLD GMGTNLRIMS MQWKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-15 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-15 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-15 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-15 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 2e-15 | 16 | 84 | 1 | 69 | MEF2C |
5f28_B | 2e-15 | 16 | 84 | 1 | 69 | MEF2C |
5f28_C | 2e-15 | 16 | 84 | 1 | 69 | MEF2C |
5f28_D | 2e-15 | 16 | 84 | 1 | 69 | MEF2C |
6c9l_A | 2e-15 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-15 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-15 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-15 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-15 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-15 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.H00739.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853655.1 | 2e-93 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A022QB92 | 1e-110 | A0A022QB92_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13821 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-24 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Migut.H00739.1.p |