PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00589.1.p
Common NameMIMGU_mgv1a013291mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 26121.8 Da    PI: 9.9799
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00589.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-27959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+ rqvtfskRr g+ KKA+E+SvLCdaeva+i+fs++gkl+e+ss
  Migut.H00589.1.p  9 KRIENKISRQVTFSKRRSGLSKKAKEISVLCDAEVALIVFSTKGKLFEFSS 59
                      79***********************************************96 PP
2K-box92.38.2e-318317310100
             K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       + +  e+l+ e+ kL ++ie Lqr+ R++ Ge+L++L+l+eLq+LeqqL+++lk+iR+kKn++++e++++lqkke++lq++n+ L k+++e
  Migut.H00589.1.p  83 NYEPKENLSLEYPKLVARIELLQRNMRNYEGEELDPLNLRELQSLEQQLDTALKRIRTKKNQVMHESVSQLQKKERSLQDQNNILAKQVKE 173
                       4455799*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.511161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-31278IPR002100Transcription factor, MADS-box
CDDcd002655.63E-38278No hitNo description
PRINTSPR004041.7E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.92387177IPR002487Transcription factor, K-box
PfamPF014865.3E-2587171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRGRVELKR IENKISRQVT FSKRRSGLSK KAKEISVLCD AEVALIVFST KGKLFEFSSD  60
SSMGRILERY EQSTYSQKKI GTNYEPKENL SLEYPKLVAR IELLQRNMRN YEGEELDPLN  120
LRELQSLEQQ LDTALKRIRT KKNQVMHESV SQLQKKERSL QDQNNILAKQ VKEKEKQEQI  180
GEITQQEHRI PSLTIGGGCQ QEEEDGNRTR LKESHAVIPP WLLPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18172171MEF2C
5f28_B2e-18172171MEF2C
5f28_C2e-18172171MEF2C
5f28_D2e-18172171MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00589.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855287.11e-160PREDICTED: agamous-like MADS-box protein AGL8
SwissprotD7SMN61e-90FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A022RW951e-162A0A022RW95_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-76AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]