PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.H00442.2.p | ||||||||
Common Name | MIMGU_mgv1a005456mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 491aa MW: 56294.3 Da PI: 6.5912 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.1 | 3.2e-18 | 128 | 218 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k l++s+v++ ++ lp +f++ + + e+++++le+e+g+++ vk+i +k++ l++GW++Fv +L egD+++F+l+g +f + Migut.H00442.2.p 128 FLKFLVRSHVGSCFWMGLPVPFCKVYL--PSEDTMVILENENGEEFPVKYIANKTG----LSAGWRKFVAGSKLLEGDVLIFQLIGPCRF--K 212 89*********************8884..346789***************777776....**************************8888..8 PP EEEE-S CS B3 94 vkvfrk 99 v ++r+ Migut.H00442.2.p 213 VYIIRA 218 888876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.1E-20 | 119 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-22 | 121 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.02E-22 | 126 | 217 | No hit | No description |
PROSITE profile | PS50863 | 13.155 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-16 | 128 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-21 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF05266 | 2.5E-7 | 364 | 479 | IPR007930 | Protein of unknown function DUF724 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 491 aa Download sequence Send to blast |
MKLKILHQSP ESQRLMKGEN LEIDEMEEEP QIRVSPEMEN SPHQELPLGK RKRKPKELID 60 DFVPIIRVRK KNSSSSKSKD VTPPGHAAAL MRKVDCTFGR SSNAQSNSPT MVRAEEVQSS 120 LSNDQPNFLK FLVRSHVGSC FWMGLPVPFC KVYLPSEDTM VILENENGEE FPVKYIANKT 180 GLSAGWRKFV AGSKLLEGDV LIFQLIGPCR FKVYIIRAND LTEVDGALSL LILDSQTKQN 240 DAEASMDAQI KKRRHRKSLP LKIVHKKKRN ESSFGSHPEK QPEEHSGNDS DEVASEVLEC 300 TKFNESSFNF KDVKTFEDFH IVVNGVCIDS ELPEQIRRKY YELCSSKNAY LHERLLPGLY 360 TKLACGIIDQ TIKIADCIKS CNLTTPRKDF EVWEKSLRSF ELLGLNVGFL RARLNHLLTL 420 AFDSEDAFEI RRYWEVQNDK SLTEDEIKKL EIKIDELKEA CEKYDREIED LKRKAESYEV 480 KFLEEVNAPW * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 251 | 268 | KRRHRKSLPLKIVHKKKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.H00442.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC182559 | 0.0 | AC182559.2 Erythranthe guttata clone MGBa-22D19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853316.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A022RXC9 | 0.0 | A0A022RXC9_ERYGU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-33 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.H00442.2.p |