PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00442.1.p
Common NameMIMGU_mgv1a005456mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 501aa    MW: 57390.6 Da    PI: 6.6499
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00442.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.3e-18138228199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k l++s+v++  ++ lp +f++ +   + e+++++le+e+g+++ vk+i +k++    l++GW++Fv   +L egD+++F+l+g  +f  +
  Migut.H00442.1.p 138 FLKFLVRSHVGSCFWMGLPVPFCKVYL--PSEDTMVILENENGEEFPVKYIANKTG----LSAGWRKFVAGSKLLEGDVLIFQLIGPCRF--K 222
                       89*********************8884..346789***************777776....**************************8888..8 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v ++r+
  Migut.H00442.1.p 223 VYIIRA 228
                       888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-20129229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-22131229IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-22136227No hitNo description
PfamPF023623.1E-16138228IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155138229IPR003340B3 DNA binding domain
SMARTSM010193.8E-21138229IPR003340B3 DNA binding domain
PfamPF052662.6E-7374489IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MKLKILHQSP ESQRLMKGEN LEIDEMEEEP QIRVSPEMEN SPHQELPLVN AFHPMLVSGK  60
RKRKPKELID DFVPIIRVRK KNSSSSKSKD VTPPGHAAAL MRKVDCTFGR SSNAQSNSPT  120
MVRAEEVQSS LSNDQPNFLK FLVRSHVGSC FWMGLPVPFC KVYLPSEDTM VILENENGEE  180
FPVKYIANKT GLSAGWRKFV AGSKLLEGDV LIFQLIGPCR FKVYIIRAND LTEVDGALSL  240
LILDSQTKQN DAEASMDAQI KKRRHRKSLP LKIVHKKKRN ESSFGSHPEK QPEEHSGNDS  300
DEVASEVLEC TKFNESSFNF KDVKTFEDFH IVVNGVCIDS ELPEQIRRKY YELCSSKNAY  360
LHERLLPGLY TKLACGIIDQ TIKIADCIKS CNLTTPRKDF EVWEKSLRSF ELLGLNVGFL  420
RARLNHLLTL AFDSEDAFEI RRYWEVQNDK SLTEDEIKKL EIKIDELKEA CEKYDREIED  480
LKRKAESYEV KFLEEVNAPW *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261278KRRHRKSLPLKIVHKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00442.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1825590.0AC182559.2 Erythranthe guttata clone MGBa-22D19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853316.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A022RXC90.0A0A022RXC9_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-33B3 family protein