PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00183.1.p
Common NameLOC105974532, MIMGU_mgv1a006143mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C2H2
Protein Properties Length: 456aa    MW: 47977 Da    PI: 8.7551
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00183.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-054971123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Migut.H00183.1.p 49 FVCEICSKGFQRDQNLQLHRRGH 71
                      89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.3E-54871IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0364971IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8874971IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
SMARTSM0035510090120IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-4113146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.2E-5121162No hitNo description
SMARTSM00355130125145IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MNDSTISGDS PTGPPKPTAK KKRNLPGMPD PDAEVVALSP KTLMATNRFV CEICSKGFQR  60
DQNLQLHRRG HNLPWKLRQR SSKEVKKRVY VCPEEGCVHH EPSRALGDLT GIKKHFCRKH  120
GEKKWKCDKC SKKYAVRSDW KAHSKICGTK EYKCDCGTLF SRRDSFITHR AFCDALAEES  180
AKSKAENPNS NEGKDVEATP PPTPPPTTVV PSVFPLQNPE ILESTTRLLE DATPPSLTNS  240
TQPSCSSSTN GSSSSNVFAS LFASSTSSGT IHSRTNGFAN LFHSGNDRSA PPSSEPISLC  300
LSSTFGTAGQ ERRQYAPAPP QPAAAVMSAT ALLQKAAQMG PAASNASLLR GLGLVSSSSL  360
NLNSNGPREW SGGGPHLEPD SLGLGLACDG GSAGLKELML RTPSVFGPKH TTLDLLGLGM  420
AAAAAGGGSG GGLSALMTMP PFGGGGGEYG GEDMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33121182364Zinc finger protein JACKDAW
5b3h_F2e-33121182364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.H00183.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012855104.10.0PREDICTED: protein indeterminate-domain 1-like
SwissprotQ9LVQ71e-159IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A022RY740.0A0A022RY74_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-99C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]