PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.G01132.1.p
Common NameMIMGU_mgv1a025932mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 121aa    MW: 14043.1 Da    PI: 6.6687
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.G01132.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.63.5e-32111111101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaC+++ r+C ++C la+yfpae++++f+ v +l+G++n lk+lk+++eeer+++++sl++eA++r++ Pv+G ++ ++kl+ +++++++e
  Migut.G01132.1.p  11 ACAACQHQSRRCDANCELAKYFPAEKAEDFEDVYHLYGMQNTLKILKSVEEEERDKTIESLIMEAKMRLEYPVHGHFSAVRKLSIEIDKAEKE 103
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       l+ +++++
  Migut.G01132.1.p 104 LEFVRRQI 111
                       **999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.35510111IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-2911108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MANAVPVVHK ACAACQHQSR RCDANCELAK YFPAEKAEDF EDVYHLYGMQ NTLKILKSVE  60
EEERDKTIES LIMEAKMRLE YPVHGHFSAV RKLSIEIDKA EKELEFVRRQ IQLFRGSDNR  120
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-1721052105LOB family transfactor Ramosa2.1
5ly0_B1e-1721052105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.G01132.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829162.12e-85PREDICTED: LOB domain-containing protein 27-like
TrEMBLA0A022PUA55e-84A0A022PUA5_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.G01132.1.p2e-85(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-26LOB domain-containing protein 27