PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.G00251.1.p
Common NameMIMGU_mgv1a001871mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family FAR1
Protein Properties Length: 774aa    MW: 88637 Da    PI: 7.9505
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.G00251.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.82.7e-2152126189
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       +fY+++A++vGF++r+ + ++s+ +g++++r+fvCskeg++++              trtgC a ++v+k ++gkw+++++++eHnHe+
  Migut.G00251.1.p  52 EFYSAHANQVGFKIRIGQLYRSRSDGSVISRRFVCSKEGFQTN--------------TRTGCAAFIRVQKADTGKWVIASIKKEHNHEF 126
                       6***************************************876..............79****************************98 PP
2FAR1644.2e-20205279189
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       kfY +YA+++GF++r+ +  +sk++g+it+r+fvCskeg++++              +r+gC a ++++k+++g w+v++l++eHnHe+
  Migut.G00251.1.p 205 KFYYAYASNIGFRIRIGQLFRSKHDGSITSRRFVCSKEGRQHP--------------SRVGCGAYMRIQKQETGGWVVDRLQKEHNHEI 279
                       6**************************************9988..............4899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-1752126IPR004330FAR1 DNA binding domain
PfamPF031011.6E-15205279IPR004330FAR1 DNA binding domain
PfamPF105514.9E-27382473IPR018289MULE transposase domain
PROSITE profilePS5096610.484659695IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-7666692IPR007527Zinc finger, SWIM-type
SMARTSM005753.6E-6670697IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MNREELVNIM NVRSKPAPLV VGKGNGFRDD EGESNMEPHV GLEFDTAEEA QEFYSAHANQ  60
VGFKIRIGQL YRSRSDGSVI SRRFVCSKEG FQTNTRTGCA AFIRVQKADT GKWVIASIKK  120
EHNHEFEASG ETCPTTRIQR KSFPTPRSSS GGASRTGIRT RDEDSPSSVV EIKRLKKDEM  180
DGVGGGLARE PSKGLEFNTA NEAYKFYYAY ASNIGFRIRI GQLFRSKHDG SITSRRFVCS  240
KEGRQHPSRV GCGAYMRIQK QETGGWVVDR LQKEHNHEID RSTDPSRTAS AASKGYREEG  300
SSILENLDLV ETNEGLSLVK RVRESNIGSD WYNMLLEYFQ SCQAEDTGFF YAVEMREGNK  360
GMNIFWADAR SRFSCAQFGD AVVFDTTYRR CNYSVPFASF VGVNHHRQPV LLGCALIADE  420
SEESFTWIFQ AWIRAMSGCR PVSIIADQDR PIQHSIAQVF PGTHHRFSAW QILDKEQENL  480
GALLSMDAEF KYEYETCIFQ SLTASEYDSA WNMLMNKYNL RENTWFKEMY RMRKSWVPLH  540
IKGTFFAGIH VDGSLKSYFS PILTAQTPLN EFIVRYEKAL EQRREEERKE DFNSFNLQAV  600
LHTKDPIEEQ CRKLYTMAMF KVFQKELLEC YSYVGIKINV EGAISRYLVQ KCGNGEERNT  660
VAFNASNLNI SCSCKYFEFE GVLCRHALKV FQIMNIRELP SRYILHRWCK NAKYGILRDV  720
DSAGGSQDFN ALMTWSLREE SRNYIEAGAA SLERYKLAFE IMQEGRRNIC WQN*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.G00251.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858405.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_012858413.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A022RUV50.0A0A022RUV5_ERYGU; Uncharacterized protein
STRINGMigut.G00251.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73472130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]