PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.G00203.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 229aa MW: 25823.5 Da PI: 8.0416 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.6e-11 | 70 | 118 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ Er+RR+++ f+ L +++P+ + ++ K++ ++ +Av+YIk+L+ Migut.G00203.1.p 70 NSLKERKRREKLSGNFSVLTSMVPNlS---NNYKPTRETVINEAVNYIKHLE 118 6778*********************55...********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.576 | 65 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-8 | 70 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-14 | 71 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-7 | 71 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.67E-8 | 71 | 120 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.8E-12 | 72 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.596 | 162 | 228 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MRDLGKEMLS KQQEIEEEEE IRKLLLGIME DYYDSVIPPL SFFSPSSGIS VADQKSGTKR 60 QRNEDSCDEN SLKERKRREK LSGNFSVLTS MVPNLSNNYK PTRETVINEA VNYIKHLEEE 120 AKRLEGLKQF QLEEPMMESP VLLKCTNQNS SVKVAVSSES TFLSVQLPSR RGSALKIVKV 180 IEKHRARVLE ARICVNEQRQ LTFTATITLG KGGGSSTIDK IREEILSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 77 | LKERKRR |
2 | 73 | 78 | ERKRRE |
3 | 74 | 79 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.G00203.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858827.1 | 1e-165 | PREDICTED: transcription factor bHLH18-like | ||||
STRING | Migut.G00203.1.p | 1e-164 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13248 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46510.1 | 3e-11 | ABA-inducible BHLH-type transcription factor |
Link Out ? help Back to Top | |
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Phytozome | Migut.G00203.1.p |