PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F02018.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | AP2 | ||||||||
Protein Properties | Length: 474aa MW: 51020 Da PI: 8.3453 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 5.9e-17 | 174 | 223 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Migut.F02018.2.p 174 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 223 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.09E-15 | 174 | 231 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.4E-9 | 174 | 223 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.21E-11 | 175 | 233 | No hit | No description |
PROSITE profile | PS51032 | 17.622 | 175 | 231 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-16 | 175 | 231 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-32 | 175 | 237 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.05E-13 | 266 | 311 | No hit | No description |
SuperFamily | SSF54171 | 2.55E-6 | 266 | 310 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-12 | 267 | 315 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MLDLNVDAVL SVDSTSCGGG AGRGNTAATA DSVASTTTST TNNAAFPSSA GADEVDCNSS 60 TRVRHSVSTL NFSILDKSVI EIEDEVDNDV INCRSELQLF PMGVSSSPPQ SLSMSPSLVR 120 AKYWLNLSVP EVPGGGGGGL ELGIYKAAQL PAATNQAPQP QVKKSRRGPR SRSSQYRGVT 180 FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF TIADYDEDMS 240 QMKNLTKEEF VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK AYDKAAIKCN 300 GSEAVTNFEP SNYDREMNMS SGIGSNLDLN LGISLSTDGQ QGYETTRNLH FPHVSNELPD 360 GKRIKIETAS ASPHELLMST KGAPPMWPIV YSGFAPNSKE RATVMSGEAV PLPGYANWPW 420 KMPSHGVGVV TPMPFISASA ASSGFSSNNA SPYLNSLVSR TPQFPASAFN TLH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F02018.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012834706.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
Swissprot | Q9SK03 | 2e-95 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A022RHV3 | 0.0 | A0A022RHV3_ERYGU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 9e-92 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F02018.2.p |