PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.F02018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | AP2 | ||||||||
Protein Properties | Length: 489aa MW: 52793 Da PI: 7.8703 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6.2e-17 | 174 | 223 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Migut.F02018.1.p 174 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 223 78*******************......55************************997 PP | |||||||
2 | AP2 | 38.7 | 2.5e-12 | 266 | 316 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+ +lg f+ + eAa+a+++a+ k +g Migut.F02018.1.p 266 SKYRGVTLHK-CGRWEARMGQF--L-GKKYMYLGLFDNEVEAARAYDKAAIKCNG 316 89********.7******5553..2.26**********99**********98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.22E-15 | 174 | 231 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.6E-9 | 174 | 223 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-32 | 175 | 237 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.25E-11 | 175 | 233 | No hit | No description |
PROSITE profile | PS51032 | 17.622 | 175 | 231 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-16 | 175 | 231 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-7 | 266 | 316 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.12E-25 | 266 | 326 | No hit | No description |
SuperFamily | SSF54171 | 2.88E-16 | 266 | 325 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.4E-31 | 267 | 330 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.974 | 267 | 324 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-15 | 267 | 324 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 268 | 279 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 306 | 326 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MLDLNVDAVL SVDSTSCGGG AGRGNTAATA DSVASTTTST TNNAAFPSSA GADEVDCNSS 60 TRVRHSVSTL NFSILDKSVI EIEDEVDNDV INCRSELQLF PMGVSSSPPQ SLSMSPSLVR 120 AKYWLNLSVP EVPGGGGGGL ELGIYKAAQL PAATNQAPQP QVKKSRRGPR SRSSQYRGVT 180 FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF TIADYDEDMS 240 QMKNLTKEEF VHILRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK YMYLGLFDNE 300 VEAARAYDKA AIKCNGSEAV TNFEPSNYDR EMNMSSGIGS NLDLNLGISL STDGQQGYET 360 TRNLHFPHVS NELPDGKRIK IETASASPHE LLMSTKGAPP MWPIVYSGFA PNSKERATVM 420 SGEAVPLPGY ANWPWKMPSH GVGVVTPMPF ISASAASSGF SSNNASPYLN SLVSRTPQFP 480 ASAFNTLH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.F02018.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012834705.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2 isoform X1 | ||||
Swissprot | B8AXC3 | 1e-104 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A022RHV3 | 0.0 | A0A022RHV3_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-102 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Migut.F02018.1.p |