PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E01090.1.p | ||||||||
Common Name | LOC105956914, MIMGU_mgv1a002904mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 628aa MW: 70004.2 Da PI: 6.0368 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42 | 1.6e-13 | 425 | 472 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h Er+RR++iN++f L +l+P+ +K +K++iL +++eY++ L+ Migut.E01090.1.p 425 RNHVLSERKRREKINERFMILGSLVPSG-----GKADKVSILDHTIEYLRGLE 472 579999********************98.....8***************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.6E-54 | 15 | 198 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.202 | 422 | 471 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-17 | 425 | 489 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.48E-13 | 425 | 476 | No hit | No description |
Pfam | PF00010 | 5.5E-11 | 425 | 472 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-18 | 426 | 487 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-16 | 428 | 477 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 628 aa Download sequence Send to blast |
MAGGDQDQKR VLEKLRKQLA LAVRSIQWSY GIFWSISAKK HGALEWGDGY YNGDIKTRKT 60 VQTVEVDTDQ LGLQRSDQLR ELYESLSLGE VIPQPKRPTA ALSPEDLTDA EWYFLVCMSF 120 VFNVGQGLPG KTLAKNGTVW LRNAHRADTK VFSRSLLAKS ASIKTIVCFP HLDGVVELGT 180 TELVPEDRNL VQHVKTSFLE GLSEDFPDVP TNSTDLDCEV LDHAITDCGD VEVSSPESSS 240 GDFADNLLRE ESNNLIDDID KEASQMMSWQ FKDEANSNNG PNNSTSSSDC VSQTRENHAT 300 AVPFSDVKIH ENQECNNSNN NNNNNNNNNN NVHYESVLSS LLKSSSQLML GPHVRNGNKE 360 SSFTGWDIIS CCKTHTTTVG APQSLLKKVL FEVGKMHESY RIENGKKDEK NEEEISKPEV 420 DEVDRNHVLS ERKRREKINE RFMILGSLVP SGGKADKVSI LDHTIEYLRG LERKVEELES 480 NKESTEVEST TQSKSHDAIE RTSDNYGPTK TDNSNKRPLT NSKRKACDLD KTGPANRRVR 540 LKDSSTDSVT IKISDKDVLI ELRCIWRESV LSEVMEAVNK LNLHSQTVQS SNSDGIFSMS 600 IKAKCKGVKS ASPSVMRQAL QKVIRKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 5e-17 | 13 | 198 | 7 | 192 | Transcription factor MYC3 |
4rqw_B | 5e-17 | 13 | 198 | 7 | 192 | Transcription factor MYC3 |
4rs9_A | 5e-17 | 13 | 198 | 7 | 192 | Transcription factor MYC3 |
4yz6_A | 5e-17 | 13 | 198 | 7 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 430 | 435 | ERKRRE |
2 | 431 | 436 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E01090.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ011142 | 1e-107 | KJ011142.1 Erythranthe lewisii basic helix-loop-helix transcription factor (ANbHLH1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836276.1 | 0.0 | PREDICTED: transcription factor EGL1 | ||||
TrEMBL | A0A022RE76 | 0.0 | A0A022RE76_ERYGU; Uncharacterized protein | ||||
STRING | Migut.E01090.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4576 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 1e-155 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.E01090.1.p |
Entrez Gene | 105956914 |