PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E00955.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | NF-YB | ||||||||
Protein Properties | Length: 245aa MW: 26821.1 Da PI: 5.4163 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 130.2 | 7.2e-41 | 63 | 154 | 2 | 93 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 re d+++ ian++ri+++vlP++aki++dake +qecvsefisf+t+ea+ +c+r+ r+t++++d+l a+a+lGf+dy+e+l+v+l+++r Migut.E00955.1.p 63 READEYMLIANITRILRRVLPTHAKIADDAKEAIQECVSEFISFITTEANRRCRRDYRRTVTPEDVLAAMASLGFDDYLESLTVFLNNHRTQ 154 799*************************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.8E-40 | 56 | 164 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.97E-31 | 66 | 167 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-19 | 71 | 132 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.7E-12 | 96 | 114 | No hit | No description |
PRINTS | PR00615 | 1.7E-12 | 115 | 133 | No hit | No description |
PRINTS | PR00615 | 1.7E-12 | 134 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MEKGGSSNIE YKYTRRARTS GIVIREGGAA RAAATATNAA NIAGAPLNVV AEEVNQQQQG 60 FKREADEYML IANITRILRR VLPTHAKIAD DAKEAIQECV SEFISFITTE ANRRCRRDYR 120 RTVTPEDVLA AMASLGFDDY LESLTVFLNN HRTQQDPERG SRNQISQIVR RDGGVGVGFL 180 HHQQPQGAPT MRPPPPPPLA APTMGYYVPV PPPVAAPIED EEEFGGLPKV TNEFGGGEEF 240 DPFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 4e-39 | 63 | 152 | 7 | 96 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E00955.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012838634.1 | 1e-125 | PREDICTED: uncharacterized protein LOC105959133 | ||||
Refseq | XP_012839458.1 | 1e-128 | PREDICTED: nuclear transcription factor Y subunit B-1-like | ||||
TrEMBL | A0A022R6Y5 | 1e-162 | A0A022R6Y5_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.E00955.1.p | 1e-179 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6044 | 4 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 1e-37 | NF-YB family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.E00955.1.p |