PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Migut.E00926.1.p | ||||||||
Common Name | MIMGU_mgv1a024790mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 233aa MW: 25856.1 Da PI: 7.1913 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C + F++ L H+++H Migut.E00926.1.p 73 YMCTFCRREFRSAQALGGHMNVH 95 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.47E-6 | 70 | 100 | No hit | No description |
PROSITE profile | PS50157 | 11.053 | 73 | 100 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MAAEFVALLS LTQSSPKSNQ FQTQFIIRLR NSEPPPMWSN KQTPPGDDSW EVRAFEEDTT 60 GNLLGCTWPP RSYMCTFCRR EFRSAQALGG HMNVHRRDRA RLHAELPMPP LPPVSPSPAT 120 TGQEFVGNGL CLVYPLHNPN NSISISTTVL FPAPPVPDNF RSPPLPISHF FKSEPNCETA 180 PHSVVSSLCH SSKTKPSPSN SNENCDKNKN LTKADAIEEL DLELRLGRRD EH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-12 | 68 | 95 | 2 | 29 | superman protein |
2l1o_A | 3e-12 | 68 | 95 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Migut.E00926.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HM453337 | 0.0 | HM453337.1 Mimulus guttatus palmate-like pentafoliata 1 transcription factor (PALM1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012857465.1 | 1e-157 | PREDICTED: transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A022RYQ3 | 1e-170 | A0A022RYQ3_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5953 | 21 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17810.1 | 6e-30 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Migut.E00926.1.p |