PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00753.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HD-ZIP
Protein Properties Length: 833aa    MW: 92753.6 Da    PI: 5.7977
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00753.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.8e-20101156156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  Migut.E00753.1.p 101 KKRYHRHTTRQIQEMESLFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 156
                       688999***********************************************998 PP
2START145.84.2e-463015292206
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                       la + +++l+k+  +++p+Wv+ s+++ + + + ++ee                 +++ea r+s+vv+m++ +lv  +ld + +W e ++   
  Migut.E00753.1.p 301 LAVSSMDQLLKMCHLADPLWVRPSDNNANGKHVLNLEEYARmfswsvslkqqpheFRTEATRDSAVVIMNSITLVDAFLDAN-KWMELFPsii 392
                       577899******************555555555555443335888899**********************************.********** PP

                       .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE..-TTS--.-TTSEE-EESSEEEEEEEECT CS
             START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd..seqkppesssvvRaellpSgiliepksn 159
                        +a+tl+ + s       g l+lm+aelq+ splvp R+  f+Ry++  +++g+wvivd  +d  ++++pp s ++ +  ++pSg++i++++n
  Migut.E00753.1.p 393 sRAKTLQMVHSEasghasGSLHLMYAELQFVSPLVPtREAHFLRYCQHnEEEGSWVIVDFPLDgfQNDYPP-SFPYYK--RRPSGCIIQDMPN 482
                       *********9999**************************************************44455555.666666..9************ PP

                       CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       g+s+vtwveh+++++  +h+++ slv+sg+a+ga++w+a lqrqce+
  Migut.E00753.1.p 483 GYSRVTWVEHAEVEDGPIHQVFSSLVSSGVAFGAQRWLAVLQRQCER 529
                       *********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-2083159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-2186159IPR009057Homeodomain-like
PROSITE profilePS5007117.23298158IPR001356Homeobox domain
SMARTSM003899.1E-1899162IPR001356Homeobox domain
CDDcd000861.05E-17101159No hitNo description
PfamPF000461.9E-17101156IPR001356Homeobox domain
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PROSITE profilePS5084843.348291532IPR002913START domain
SuperFamilySSF559612.93E-31292531No hitNo description
CDDcd088752.23E-111295528No hitNo description
SMARTSM002342.5E-29300529IPR002913START domain
PfamPF018523.8E-39302529IPR002913START domain
SuperFamilySSF559611.56E-16573789No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MYGDCQVLST MGGNINAIPS SENSVLYSSS PIHHHHHHQQ NPNFSFMPNI NPFNIFSPVT  60
PKEEKSKLEE MESGSGSEHV DGVSGNEQDQ AAEQNNPKNK KKRYHRHTTR QIQEMESLFK  120
ECPHPDDKQR LKLSQDLGLK PRQVKFWFQN RRTQMKAQQD RQSNVVLRAE NESLKNENYQ  180
LQSTLRNLAC PSCGGPAMLG EMGYDEQQLR IENARLKEEF ERVCCLVSQY TGRPMQPMGP  240
TPLLTHSLDL DIMTPYPRKF DQDHITDNTM LPNLPFMPEN SNFPVNSLMI LDEEKSLALD  300
LAVSSMDQLL KMCHLADPLW VRPSDNNANG KHVLNLEEYA RMFSWSVSLK QQPHEFRTEA  360
TRDSAVVIMN SITLVDAFLD ANKWMELFPS IISRAKTLQM VHSEASGHAS GSLHLMYAEL  420
QFVSPLVPTR EAHFLRYCQH NEEEGSWVIV DFPLDGFQND YPPSFPYYKR RPSGCIIQDM  480
PNGYSRVTWV EHAEVEDGPI HQVFSSLVSS GVAFGAQRWL AVLQRQCERF ASLMARNISD  540
LGVIPSLEAR KNLMNLAQRM IRTFSLNIST CYGQSWTALS DSADDTVRIT TRKVTQPGQP  600
NGLILSAVST TWLPYSHKQV FDFLRDERSR AQLEVLSNGN SLHEVAHIAN GSNPGNCISL  660
LRINVASNSS QSVELVLQES CSDDSGSVVV YTTIDVDAIQ MAMNGEDPSC IPLLPLGFVV  720
IPLGQTNNYE GTNVITKQPS DQNGQLPDSG CLLTVGLQVL ASTIPTAKLN LSSVTAINHH  780
LCSTVQQINA VLGNCGNTTA NFSENNVGIL GANVENEAAP EIKTTDLVGP AS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.E00753.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843107.10.0PREDICTED: homeobox-leucine zipper protein HDG5
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A022RYZ10.0A0A022RYZ1_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]