PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E00626.1.p | ||||||||
Common Name | MIMGU_mgv1a024502mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 208aa MW: 23717.3 Da PI: 4.7816 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4e-18 | 12 | 66 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++f++eq++ Le+ F ++ p + + +LA+klgL+ rq+ +WFqN+Ra+ k Migut.E00626.1.p 12 NNKRRFSDEQIQSLETTFGTESRPELRLKHHLADKLGLQPRQIAIWFQNKRARSK 66 56789************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 104.3 | 1e-33 | 13 | 104 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+++LE++F +e++ e + K++la +Lglqprq+a+WFqn+RAR k+k +E++y+ Lk++yd+l+ + e+L+ke+++L ++++ Migut.E00626.1.p 13 NKRRFSDEQIQSLETTFGTESRPELRLKHHLADKLGLQPRQIAIWFQNKRARSKSKMIEQEYSELKSSYDNLALQFEALRKENQTLLIQVQR 104 79************************************************************************************988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.248 | 8 | 68 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-16 | 9 | 79 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.3E-15 | 10 | 72 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.70E-13 | 11 | 69 | No hit | No description |
Pfam | PF00046 | 1.7E-15 | 12 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-17 | 14 | 75 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 43 | 66 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.6E-13 | 68 | 109 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MSTTSAKNSN KNNKRRFSDE QIQSLETTFG TESRPELRLK HHLADKLGLQ PRQIAIWFQN 60 KRARSKSKMI EQEYSELKSS YDNLALQFEA LRKENQTLLI QVQRLRKMTE KSDGEENDHE 120 NQITPPKTSE NPTFLLDMNN HDMCVTSCSD LNRKIDYLEE DAADILNMAE IAEDSLLASP 180 ENGCSFDSCA FLDNTAAGGT TSQWWDF* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E00626.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012842101.1 | 1e-154 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A022QXY4 | 1e-142 | A0A022QXY4_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10273 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 3e-36 | homeobox 12 |
Link Out ? help Back to Top | |
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Phytozome | Migut.E00626.1.p |