PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.E00430.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 221aa MW: 25010.3 Da PI: 8.0755 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 73 | 128 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F++ n++++ +++e LA+kl+L+ rqV vWFqNrRa+ k Migut.E00430.1.p 73 RKKLRLTKEQSRLLEESFRQqNHTLNPKQKEILAQKLHLKARQVEVWFQNRRARSK 128 78889**************98*********************************98 PP | |||||||
2 | HD-ZIP_I/II | 107.8 | 7.7e-35 | 73 | 162 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLEesF++++ +L+p++K+ la++L+l++rqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n++L+ eveeLr + Migut.E00430.1.p 73 RKKLRLTKEQSRLLEESFRQQNhTLNPKQKEILAQKLHLKARQVEVWFQNRRARSKLKQTEMECEYLKRWFVSLTEQNKKLQIEVEELR-S 162 69****************99998*****************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-17 | 48 | 131 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.01E-16 | 63 | 131 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.876 | 69 | 130 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-14 | 71 | 134 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.87E-14 | 72 | 131 | No hit | No description |
Pfam | PF00046 | 9.2E-16 | 73 | 128 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 105 | 128 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 7.9E-9 | 130 | 164 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 7.7E-16 | 130 | 173 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MENFPNNSSS CLDLTIAMPG FSSSPSSLPS SGESGGGRMK VVDVNLVPSS EREEECMEEE 60 EEDESPNKGP APRKKLRLTK EQSRLLEESF RQQNHTLNPK QKEILAQKLH LKARQVEVWF 120 QNRRARSKLK QTEMECEYLK RWFVSLTEQN KKLQIEVEEL RSLKAGHHPD CRHLPPPPST 180 LTMCPHCQRV TTTAATNNHL DTATKMLALQ SRQPSAACFN * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 130 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.E00430.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012846045.1 | 1e-162 | PREDICTED: homeobox-leucine zipper protein ATHB-17 | ||||
Swissprot | Q8S9N6 | 2e-66 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
TrEMBL | A0A2G9HFF8 | 4e-83 | A0A2G9HFF8_9LAMI; Transcription factor HEX |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 5e-55 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Migut.E00430.1.p |
Publications ? help Back to Top | |||
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