PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D02228.2.p
Common NameMIMGU_mgv1a001309mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family HD-ZIP
Protein Properties Length: 848aa    MW: 92855.9 Da    PI: 6.2124
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D02228.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41e-172885457
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Migut.D02228.2.p 28 YVRYTAEQVEALERVYVECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85
                      5789****************************************************97 PP
2START155.34.8e-491673742204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g+ ++ +f+ s+++sg a+ra+g+v  ++    +e+l+d+  W +++++ e+      g  g+++
  Migut.D02228.2.p 167 IAEETLAEFLSKATGTAVDWVQMPGMKPGPGSVGIFAISQSCSGVAARACGLVGLEPI-KIAEILKDRSSWFRDCRSLEVFTMFPAGngGTIE 258
                       7899******************************************************.6666777766***********999999999**** PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                         +++++a+++l+p Rdf+++Ry+ +++ g++vi+++S++ +   p+    s++vRae+lpSg+li+p+++g+s +++v+h +l+++ ++++l
  Migut.D02228.2.p 259 MLYTQTYAPTTLAPaRDFWTLRYTTTMENGSLVICERSLSGTGAGPNaaaASQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEAWNVPEVL 351
                       ********************************************9999999****************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+ + +++t+ a+l++ +
  Migut.D02228.2.p 352 RPLYESSKVVAQRTTIAALKYIR 374
                       *******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.0622286IPR001356Homeobox domain
SMARTSM003892.5E-142490IPR001356Homeobox domain
SuperFamilySSF466894.28E-162588IPR009057Homeodomain-like
CDDcd000861.23E-152787No hitNo description
PfamPF000462.4E-152885IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-172985IPR009057Homeodomain-like
CDDcd146862.69E-579118No hitNo description
PROSITE profilePS5084826.882157385IPR002913START domain
CDDcd088753.67E-69161377No hitNo description
Gene3DG3DSA:3.30.530.207.6E-19166352IPR023393START-like domain
SuperFamilySSF559616.73E-33166378No hitNo description
SMARTSM002344.5E-37166376IPR002913START domain
PfamPF018529.9E-47167374IPR002913START domain
SuperFamilySSF559615.91E-5414494No hitNo description
SuperFamilySSF559615.91E-5524597No hitNo description
SuperFamilySSF559615.91E-5637645No hitNo description
PfamPF086702.5E-47701846IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MAMVAQQQHH RENSGGSLSK HLDAAGKYVR YTAEQVEALE RVYVECPKPS SLRRQQLIRE  60
CPILSNIEPK QIKVWFQNRR CREKQRKEST RLQSVNRKLN AMNKLLMEEN DRLQKQVSQL  120
VCENGFMKQH LHSATGPTAV DASCESAVTT PRHSLGDASN PAGLLSIAEE TLAEFLSKAT  180
GTAVDWVQMP GMKPGPGSVG IFAISQSCSG VAARACGLVG LEPIKIAEIL KDRSSWFRDC  240
RSLEVFTMFP AGNGGTIEML YTQTYAPTTL APARDFWTLR YTTTMENGSL VICERSLSGT  300
GAGPNAAAAS QFVRAEMLPS GYLIRPCDGG GSIIHIVDHL NLEAWNVPEV LRPLYESSKV  360
VAQRTTIAAL KYIRQIAQET SGEVVYGLGR QPAVLRTFSQ KLSRGFNDAI NGFNDDGWSL  420
LNCNDNAEDV IIAVTSAKNL TSSSNTIPMV GGGILCAKAS MLLQNVPPAV LVRFLREHRS  480
EWADFNVDAY AAASLKSTYA YPGMRDHTRF TGSQIIMPLG QTIEYEEMLE VIRLEGHSLS  540
HEDAFMPRDI HLLQLCTGID ESAVGACSEL IFAPIDEMFP DDAQLLPSGF RIIPLDSKPV  600
DLQDSLTSHH KTLDLTSSLE VGPTVGNNNG KNAAYSGRSI LTIAFQFPFE SSLQDNVATM  660
ARQYVRSVVS SVQRVAMAIS PSETGPVVGP KISPASPEAL TLAHWICQSY SYYVGSELLR  720
STDSASGEGL LKSLWQHQDA ILCCSLKAVP VFTFANQAGL DMLETTLVSL QDIPLEKIFD  780
DCGRKALFSE FAKIMQQGFA QLPGGICMSI MGRHISYEQA FVWKVFAAED ETTVHCLAFS  840
FVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D02228.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827869.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A022PVJ60.0A0A022PVJ6_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]