PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D02228.1.p | ||||||||
Common Name | MIMGU_mgv1a001309mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 848aa MW: 92855.9 Da PI: 6.2124 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1e-17 | 28 | 85 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Migut.D02228.1.p 28 YVRYTAEQVEALERVYVECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85 5789****************************************************97 PP | |||||||
2 | START | 155.3 | 4.8e-49 | 167 | 374 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g+ ++ +f+ s+++sg a+ra+g+v ++ +e+l+d+ W +++++ e+ g g+++ Migut.D02228.1.p 167 IAEETLAEFLSKATGTAVDWVQMPGMKPGPGSVGIFAISQSCSGVAARACGLVGLEPI-KIAEILKDRSSWFRDCRSLEVFTMFPAGngGTIE 258 7899******************************************************.6666777766***********999999999**** PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 +++++a+++l+p Rdf+++Ry+ +++ g++vi+++S++ + p+ s++vRae+lpSg+li+p+++g+s +++v+h +l+++ ++++l Migut.D02228.1.p 259 MLYTQTYAPTTLAPaRDFWTLRYTTTMENGSLVICERSLSGTGAGPNaaaASQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEAWNVPEVL 351 ********************************************9999999****************************************** PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s+ + +++t+ a+l++ + Migut.D02228.1.p 352 RPLYESSKVVAQRTTIAALKYIR 374 *******************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.062 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-14 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-16 | 25 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.23E-15 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 2.4E-15 | 28 | 85 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-17 | 29 | 85 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 2.69E-5 | 79 | 118 | No hit | No description |
PROSITE profile | PS50848 | 26.882 | 157 | 385 | IPR002913 | START domain |
CDD | cd08875 | 3.67E-69 | 161 | 377 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 7.6E-19 | 166 | 352 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 6.73E-33 | 166 | 378 | No hit | No description |
SMART | SM00234 | 4.5E-37 | 166 | 376 | IPR002913 | START domain |
Pfam | PF01852 | 9.9E-47 | 167 | 374 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.91E-5 | 414 | 494 | No hit | No description |
SuperFamily | SSF55961 | 5.91E-5 | 524 | 597 | No hit | No description |
SuperFamily | SSF55961 | 5.91E-5 | 637 | 645 | No hit | No description |
Pfam | PF08670 | 2.5E-47 | 701 | 846 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 848 aa Download sequence Send to blast |
MAMVAQQQHH RENSGGSLSK HLDAAGKYVR YTAEQVEALE RVYVECPKPS SLRRQQLIRE 60 CPILSNIEPK QIKVWFQNRR CREKQRKEST RLQSVNRKLN AMNKLLMEEN DRLQKQVSQL 120 VCENGFMKQH LHSATGPTAV DASCESAVTT PRHSLGDASN PAGLLSIAEE TLAEFLSKAT 180 GTAVDWVQMP GMKPGPGSVG IFAISQSCSG VAARACGLVG LEPIKIAEIL KDRSSWFRDC 240 RSLEVFTMFP AGNGGTIEML YTQTYAPTTL APARDFWTLR YTTTMENGSL VICERSLSGT 300 GAGPNAAAAS QFVRAEMLPS GYLIRPCDGG GSIIHIVDHL NLEAWNVPEV LRPLYESSKV 360 VAQRTTIAAL KYIRQIAQET SGEVVYGLGR QPAVLRTFSQ KLSRGFNDAI NGFNDDGWSL 420 LNCNDNAEDV IIAVTSAKNL TSSSNTIPMV GGGILCAKAS MLLQNVPPAV LVRFLREHRS 480 EWADFNVDAY AAASLKSTYA YPGMRDHTRF TGSQIIMPLG QTIEYEEMLE VIRLEGHSLS 540 HEDAFMPRDI HLLQLCTGID ESAVGACSEL IFAPIDEMFP DDAQLLPSGF RIIPLDSKPV 600 DLQDSLTSHH KTLDLTSSLE VGPTVGNNNG KNAAYSGRSI LTIAFQFPFE SSLQDNVATM 660 ARQYVRSVVS SVQRVAMAIS PSETGPVVGP KISPASPEAL TLAHWICQSY SYYVGSELLR 720 STDSASGEGL LKSLWQHQDA ILCCSLKAVP VFTFANQAGL DMLETTLVSL QDIPLEKIFD 780 DCGRKALFSE FAKIMQQGFA QLPGGICMSI MGRHISYEQA FVWKVFAAED ETTVHCLAFS 840 FVNWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D02228.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827869.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein REVOLUTA-like | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | A0A022PVJ6 | 0.0 | A0A022PVJ6_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.D02228.1.p |