PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D02159.1.p | ||||||||
Common Name | LOC105949010, MIMGU_mgv1a020330mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 186aa MW: 21324.2 Da PI: 10.059 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.5 | 2e-14 | 16 | 61 | 2 | 47 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 ri+ +s tfskRr g++ KA+ +S C+a+vav+++s+tgk + Migut.D02159.1.p 16 RIKKDSDCFATFSKRRLGLFRKASDVSAQCNADVAVVVYSPTGKPF 61 7888888999*********************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.203 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.3E-18 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-21 | 8 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-11 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-17 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-11 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-11 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MERKRTKGRQ KIAIARIKKD SDCFATFSKR RLGLFRKASD VSAQCNADVA VVVYSPTGKP 60 FSFFHPTMES VVSRIENPNP KTSDSSRLFE AYTRTRVMQL NQMIEKLDGE LQAEVEREKK 120 LEDETKKKKN RTVSFWEEEE AVGKFDEEQV KNVTDLLENI KARLRVREDE LKRGASSSSS 180 SFLLH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D02159.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827730.1 | 1e-134 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A022PXD6 | 1e-132 | A0A022PXD6_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 1e-23 | AGAMOUS-like 57 |
Link Out ? help Back to Top | |
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Phytozome | Migut.D02159.1.p |
Entrez Gene | 105949010 |