PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D02080.10.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB_related
Protein Properties Length: 675aa    MW: 74774.3 Da    PI: 9.7787
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D02080.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.7e-08575624147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r ++T  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Migut.D02080.10.p 575 RRPFTVAEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 624
                        679***********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.34E-6376449IPR029071Ubiquitin-related domain
PROSITE profilePS500538.916381449IPR000626Ubiquitin domain
PROSITE profilePS5129415.175570629IPR017930Myb domain
SMARTSM007178.9E-8574627IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-10575625IPR009057Homeodomain-like
CDDcd116601.06E-17576626No hitNo description
SuperFamilySSF466896.55E-16576657IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPIP RAARSARRRC MFKKKADDNQ QMCAFDLLAT VAGKLLSDGE  60
NNNTSSRKDI PARVEDPVCK VEEDIKPPLD EKSSSGAHNY YERNFLFTEL VSEQNDAISR  120
PASGITTSDC SEKVNSAEQL VNDDCKLRLG IFTPSVDFYG SENESRKETK KIDIANNNNN  180
NNNNNNNNNN SNNNNNSNNN NNTKTMSIRN ASEGFDRKPS GLVCSVDNSV KFPFCKNPVN  240
NINNNGESVN LVNRDDDDNF SERARNKAAA LKSPPRVGDR RFRKLQHCAE RSNYVNRKNN  300
SKRQRSLRDY PFKKRKLYEC SGSVSNSDEG NSSGGIHRQN ENGTNPDGIG SGPTLPEVAA  360
PPTPTSVAGG YVSFRSRNSQ VKLKIKSFRV PELFIEIPET ATVGSLKRTV MEAVNAVLGG  420
GLRVGVVVQG KKIRDDNKTL LQTGISHDSN NSDNTLGFTL EPSPAPPPLL QSSYPESKPL  480
PRYLAAVNNQ QGNNNNNNVA LDTDTVSTPS PAADVPGSSF SNFMESDYDS APSHSRMSLS  540
ESKALVPLCS TKQDALAVVP FRKSKRSESV QRRIRRPFTV AEVEALVQAV EKLGTGRWRD  600
VKLRAFDSAK HRTYVDLKDK WKTLVHTARI SPQQRRGEPV PQELLDRVLT AHAYWSQQQA  660
KQQLKSHPDT CLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-535626654107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278284DRRFRKL
2301316KRQRSLRDYPFKKRKL
3306315LRDYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D02080.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827894.10.0PREDICTED: telomere repeat-binding protein 5 isoform X1
RefseqXP_012827895.10.0PREDICTED: telomere repeat-binding protein 5 isoform X1
RefseqXP_012827896.10.0PREDICTED: telomere repeat-binding protein 5 isoform X1
RefseqXP_012827897.10.0PREDICTED: telomere repeat-binding protein 5 isoform X1
RefseqXP_012827898.10.0PREDICTED: telomere repeat-binding protein 5 isoform X1
TrEMBLA0A022PW090.0A0A022PW09_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-93TRF-like 2