PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.D01883.1.p

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

FAR1

Protein Properties

Length: 898aa MW: 103174 Da PI: 7.4013

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D01883.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26	3e-08	128	189	29	90
FAR1 29 tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k t +C ++gk++++++ ++++ + + ++++ C l +k+k+g w+++ + +HnH+l Migut.D01883.1.p 128 GKITITCERYGKARNKSNIDVESTKFKGSKKCRCPFALSGRKKKNGLWKLSISNGKHNHPLK 189 467899*********9999*************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF09429	3.6E-11	1	75	IPR019007	WW domain binding protein 11
Pfam	PF03101	4.3E-6	128	188	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-22	301	396	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006396	Biological Process	RNA processing

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MNPTDAFVEE ITEIEFNRNE EERTQVREDG IVENNHETLT GQIEKLDEMK ADGALDKTRK 60 QKKRQFEDRL NHVTKKTKVY LEPFEEFDCS EYFVRNEAFD SKEELKEWAK SIGRDHDMFL 120 ITQSTSRGKI TITCERYGKA RNKSNIDVES TKFKGSKKCR CPFALSGRKK KNGLWKLSIS 180 NGKHNHPLKI YGHSFGHGLS PEQYETVAAL IMNRVKPKEI LDSLRQENPG IRTSMKDIYN 240 AVNKFKAETI GLKTIMQQFL HCIQENKYVK WHRADPSTDQ IMDIMFAHRQ SIELLKLFPY 300 VLLMNSTHKI NKYKMCLLEI IGVTPVGKYF NVAVAFLRNE SEEHYEWALG NLRSLFDNGV 360 GPGVIVTHRE SSLMKALDYV FPRTYHLLCL AHINENVQLN ARKFMGSKEL GDEFTCGEWK 420 KLVNSQSLHE FETNHAQILR DHQSNALLLT YLKETWLVYK DRFVDAWTNQ VMHFGNTKMN 480 TYFLNCTLLH SSLKMWLGSS TDKFDNVWKQ VDSQFECQIN EILSELAKSS KIQERVVTYP 540 CFRNLEGVVV QEALSMMYKE HRVGHSRESC KCALRLTHGL PCAHEIAEKE RDGDAFDGED 600 VHSFWRTMST DALSSIDFQS DHNEEVRDKE LRARLVGLVE ELLLLPINEQ KEILKELYLC 660 YKPTSQPKKN LPARSSSGSR GHSLSLALLT APQEKTSTKF DFTGFIPPFV VPSILSWVDV 720 IGDGNCGYRC VAEVVMGSQD HWMKVRKALF MELSDRFEMY TKVYGGGAEG EQYVASMMSS 780 LCHWTDTSAP VERWMTLSDM GLVIATHYNV MVLELSSRQN LTHLPLVSPD GAGQLSSVVG 840 IGYEATAKHF VLLRVSDECP VPPFNPQWRR YKQPSVAYLE NLFARRCRMW ELLSAAM*

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MNPTDAFVEE ITEIEFNRNE EERTQVREDG IVENNHETLT GQIEKLDEMK ADGALDKTRK  60
QKKRQFEDRL NHVTKKTKVY LEPFEEFDCS EYFVRNEAFD SKEELKEWAK SIGRDHDMFL  120
ITQSTSRGKI TITCERYGKA RNKSNIDVES TKFKGSKKCR CPFALSGRKK KNGLWKLSIS  180
NGKHNHPLKI YGHSFGHGLS PEQYETVAAL IMNRVKPKEI LDSLRQENPG IRTSMKDIYN  240
AVNKFKAETI GLKTIMQQFL HCIQENKYVK WHRADPSTDQ IMDIMFAHRQ SIELLKLFPY  300
VLLMNSTHKI NKYKMCLLEI IGVTPVGKYF NVAVAFLRNE SEEHYEWALG NLRSLFDNGV  360
GPGVIVTHRE SSLMKALDYV FPRTYHLLCL AHINENVQLN ARKFMGSKEL GDEFTCGEWK  420
KLVNSQSLHE FETNHAQILR DHQSNALLLT YLKETWLVYK DRFVDAWTNQ VMHFGNTKMN  480
TYFLNCTLLH SSLKMWLGSS TDKFDNVWKQ VDSQFECQIN EILSELAKSS KIQERVVTYP  540
CFRNLEGVVV QEALSMMYKE HRVGHSRESC KCALRLTHGL PCAHEIAEKE RDGDAFDGED  600
VHSFWRTMST DALSSIDFQS DHNEEVRDKE LRARLVGLVE ELLLLPINEQ KEILKELYLC  660
YKPTSQPKKN LPARSSSGSR GHSLSLALLT APQEKTSTKF DFTGFIPPFV VPSILSWVDV  720
IGDGNCGYRC VAEVVMGSQD HWMKVRKALF MELSDRFEMY TKVYGGGAEG EQYVASMMSS  780
LCHWTDTSAP VERWMTLSDM GLVIATHYNV MVLELSSRQN LTHLPLVSPD GAGQLSSVVG  840
IGYEATAKHF VLLRVSDECP VPPFNPQWRR YKQPSVAYLE NLFARRCRMW ELLSAAM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D01883.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012853005.1	0.0	PREDICTED: uncharacterized protein LOC105972586
STRING	Migut.D01883.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10536	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-11	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Migut.D01883.1.p