PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01865.1.p
Common NameMIMGU_mgv1a010475mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family LBD
Protein Properties Length: 312aa    MW: 35606.5 Da    PI: 5.1436
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01865.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260111.36.7e-35101091100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++rr+C+++C lap fpa+qpk f+nvh+lFG++n+++llk+l+++++ +am+s+ ++A  r + Pv+G++  i++l+ q++ ++ e
  Migut.D01865.1.p  10 ACAACKYQRRRCTPECLLAPFFPADQPKMFQNVHRLFGVKNIQNLLKELRPDQKVTAMKSIKFHALQRDKYPVHGCLFEIRHLNYQIQMAEDE 102
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       l+++ ++
  Migut.D01865.1.p 103 LQAVLQQ 109
                       *998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.7359110IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-3310106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTIKSGTGQA CAACKYQRRR CTPECLLAPF FPADQPKMFQ NVHRLFGVKN IQNLLKELRP  60
DQKVTAMKSI KFHALQRDKY PVHGCLFEIR HLNYQIQMAE DELQAVLQQL AYYRQQQQQQ  120
QQQQQQQQQQ QQQIAATEDY MSELQLGVAP PRNAPFSLED NNVVPQYNCV APQASYSNSG  180
NVDYSINYLD FKENNNVVNS FCEQQQHQQE QQQQTYSNSN DNNTSSMVVH PAHLIVPQAL  240
CVQQEIGQDY NEMHSFFDCV DDTQSYIGSK EACDSSLDSS PSKDTRQLVH EEMAENELKS  300
AAAFFSLTSV N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2661137114LOB family transfactor Ramosa2.1
5ly0_B2e-2661137114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01865.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012852954.10.0PREDICTED: LOB domain-containing protein 27-like
TrEMBLA0A022QA290.0A0A022QA29_ERYGU; Uncharacterized protein
STRINGMigut.D01865.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-45LOB domain-containing protein 27