PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01715.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family MYB
Protein Properties Length: 245aa    MW: 27644.6 Da    PI: 5.6487
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01715.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-131461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W+++Ed +l  ++ ++G  +W++ +++ g+ R++k+c++rw +yl
  Migut.D01715.1.p 14 KGAWSEDEDNKLRSYILRYGHWNWRLLPKYAGLARCGKSCRLRWVNYL 61
                      79******************99************************97 PP
2Myb_DNA-binding53.17.2e-1767110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g++T++E+ l+v+++ qlG++ W++Ia+ ++ gRt++++k++w++
  Migut.D01715.1.p  67 KGNFTKQEENLIVELHSQLGPK-WSSIAANLP-GRTDNDIKNFWHT 110
                       79******************99.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.501961IPR017930Myb domain
SuperFamilySSF466896.25E-2811108IPR009057Homeodomain-like
SMARTSM007172.2E-91363IPR001005SANT/Myb domain
PfamPF002497.9E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-201568IPR009057Homeodomain-like
CDDcd001674.27E-81661No hitNo description
PROSITE profilePS5129423.32262116IPR017930Myb domain
SMARTSM007174.3E-1466114IPR001005SANT/Myb domain
PfamPF002494.6E-1567110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2269114IPR009057Homeodomain-like
CDDcd001678.51E-1169110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVRKGSYDRN GIKKGAWSED EDNKLRSYIL RYGHWNWRLL PKYAGLARCG KSCRLRWVNY  60
LKPGVIKGNF TKQEENLIVE LHSQLGPKWS SIAANLPGRT DNDIKNFWHT RIHKRRPNRN  120
QIPKIITSPI TTAELASSKE NCDHVTFSNE TGNESASSSI NNASSTVLSS DEADLWGDDV  180
FLVADINTTS QNDYFSPLHY AEITVEAGNL SSEIFASNLS VEELEGGIYD DDFSYYDYGM  240
DLFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-23141157107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01715.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853902.10.0PREDICTED: transcription factor MYB114-like
TrEMBLA0A022Q4E81e-150A0A022Q4E8_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-49myb domain protein 15