PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D01317.1.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family M-type_MADS
Protein Properties Length: 201aa    MW: 23096.4 Da    PI: 8.8485
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D01317.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.13.5e-21957149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      k+ie ks  qvtfskRr g++ KA+ELSvLC+ae+a+++ s+ +k+y y
  Migut.D01317.1.p  9 KKIEKKSSLQVTFSKRRIGLFRKASELSVLCGAEIAILVQSPANKIYSY 57
                      68*********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-27171IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.296161IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-20323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGRRKIEIKK IEKKSSLQVT FSKRRIGLFR KASELSVLCG AEIAILVQSP ANKIYSYGHP  60
SVETLLDRYQ TGGGGGAASS IIPYREDGRS KYDEAVKKLE IVKRSMKQES SSIISSRFWW  120
DEPMEGMELY ELEEYAEAME ALKDNVLRRV DEMEKQKSIA ASASMWDLDP TFQINYQDFD  180
NFNFFKNQIM TAYAFIKFRH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-15169169MEF2C
5f28_B4e-15169169MEF2C
5f28_C4e-15169169MEF2C
5f28_D4e-15169169MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D01317.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012833857.11e-102PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A022RN391e-114A0A022RN39_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13821415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-23AGAMOUS-like 61