PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.D00805.1.p

Common Name

LOC105963207, MIMGU_mgv1a011106mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Protein Properties

Length: 293aa MW: 33436.5 Da PI: 9.7545

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.D00805.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.3	5.9e-18	140	229	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v + +l lp kf+++h +k ++++++le+e+g++++ k+i +++ l++GW+ F+ +++L++gD ++F+l++ ++f + Migut.D00805.1.p 140 FVKSMVRSHVYSCFWLGLPGKFCKDHLSK--STVDMVLENEEGEEYDAKFISERT----GLSGGWRAFALDHKLDDGDALLFELIEPTRF--K 224 89**********************655..6789***********54444....4**********************987666..6 PP EEEE- CS B3 94 vkvfr 98 v ++r Migut.D00805.1.p 225 VYIVR 229 66655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-20	132	229	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.0E-22	134	234	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.04E-25	138	229	No hit	No description
PROSITE profile	PS50863	12.985	140	231	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-16	140	229	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-22	140	234	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MANESSATAY EEARKQRLLE NQKRFEDLGL LKLSKNLSNL KKPEKSQNRH VRSKAADNFL 60 IEPRRSSRAR NPVPSYRDDV DVGLGGLPSS RKRSKLNSSW ATYLARPLEE VKTASYEERV 120 RAHKYAEKLQ SNLQDGNPSF VKSMVRSHVY SCFWLGLPGK FCKDHLSKST VDMVLENEEG 180 EEYDAKFISE RTGLSGGWRA FALDHKLDDG DALLFELIEP TRFKVYIVRA FDAEKEHEKE 240 NEKEPVLEHG SDGEGTLNKE TKNRKKKDNN LTKPKKEESS EISGTRRSSR NK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.D00805.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012843083.1	0.0	PREDICTED: putative B3 domain-containing protein At5g58280
Swissprot	Q9FHB2	4e-73	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	A0A022S123	0.0	A0A022S123_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12510	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	3e-73	B3 family protein

Link Out ? help Back to Top
Phytozome	Migut.D00805.1.p
Entrez Gene	105963207

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]