PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D00568.1.p | ||||||||
Common Name | LOC105951028, MIMGU_mgv1a008008mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | bHLH | ||||||||
Protein Properties | Length: 389aa MW: 42870 Da PI: 6.6808 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.5 | 4.1e-12 | 321 | 366 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ k + +++L +Av+YIk+Lq Migut.D00568.1.p 321 SIAERVRRTKISERMRKLQELVPNM----EKQTNTSDMLDLAVDYIKDLQ 366 689*********************6....4679****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-16 | 314 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.97 | 315 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.08E-11 | 319 | 370 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.2E-15 | 319 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 321 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-9 | 321 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MNSNHNNQQQ QQQNMQAAGA GLTRYRSAPS SYFANLLNTP AGADGGFGGA GDFEELFNEA 60 RASSPETQRI FSRFMSNSDD SVRESSSPCV MTDLPSPSPL NPQFYPPTKA EPEFEQRLQR 120 QRSNDYSEPV HSSAMDGEYN RVLGSFSSSH VAHMKIERAG AGGGSGLIRH SSSPPGLFAN 180 INIDNEFGTM RTFGSGNTNN NNAEASISSS SRFKNQMDSI DEIENKGIGE NNSSDYITGF 240 PMNAWDDDFL NELADNDNKR FSNNANDQSN EGGNNRPTNR LSHHLSMPTS SAELSAMEKL 300 LQDSVPCKIR AKRGHATHPR SIAERVRRTK ISERMRKLQE LVPNMEKQTN TSDMLDLAVD 360 YIKDLQRQVK TLSDNRAKCS CSAKHKPS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D00568.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829876.1 | 0.0 | PREDICTED: transcription factor bHLH130-like | ||||
TrEMBL | A0A022S1T5 | 0.0 | A0A022S1T5_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D00568.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4605 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 2e-58 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.D00568.1.p |
Entrez Gene | 105951028 |