PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D00511.1.p
Common NameMIMGU_mgv1a025237mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family B3
Protein Properties Length: 673aa    MW: 74804 Da    PI: 6.0597
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D00511.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.12.4e-21535632296
                       EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       +kvl++sdv+++gr+vlpkk ae+h  +++++ ++t+ +ed  s+r+W++++++  ++ks++y+l+ ++ +Fv+ ngL+egDf+v++  ++ +
  Migut.D00511.1.p 535 QKVLKQSDVGNLGRIVLPKKEAESHlpELETRDGMTIAMEDiGSSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRVNGLQEGDFIVIY--SDtK 624
                       79*************************999***********7788*******99777777777777.********************..4449 PP

                       EE..EEEE CS
                B3  89 efelvvkv 96 
                       +++++++ 
  Migut.D00511.1.p 625 CGKYMIRG 632
                       99888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-28527637IPR015300DNA-binding pseudobarrel domain
CDDcd100153.94E-34532633No hitNo description
SuperFamilySSF1019363.73E-23533630IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.0E-22534636IPR003340B3 DNA binding domain
PROSITE profilePS5086311.011534636IPR003340B3 DNA binding domain
PfamPF023621.4E-17535631IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MEEDHQDLWL DRDQDDLLDV NDASIFYDDF PPLPDFPCMS SSSSSSSTPA ASRPTAVTST  60
SSSATSSSPA ASWPMMKSDG DEFKDCCEAV KMEPAALSST ASMDIPPPPP PADHDGLCDV  120
DCINVMENFG YMDLIDSNEI WDPSSIFQSE NPQDFLADDQ HAAAQAAAPP PPPQNMDCQD  180
QENDSFSSFL EGNSELAFIF FEWLKQNRDY ISAEDMRNIK LKRSTIENAS KRLGSNKEGK  240
KQLLKLILEW VENYQLQKKP PPITAEGGGG PQSPNPNPNF NYTPLPQDPN TCFPAPTWMP  300
PPPQPDQVSS MMAAPPFSGQ HMAGYSGDPY SNQIPMVPMH HQVVNGIAYQ HSPEYAQSWP  360
ISPYPMPPPP PHHQFSPYPD SNGHVMTHHH HQHHHHHQQT VYGNPYQVYD PNGERLMRLG  420
SSATKEARKK RMARQKKMYS HHHRHSSNSG QNQSQLNDAD VVGDGGDEGD NWYWSGGGGG  480
GDASSPTNAN APPGDDSHTP SGDRPSKQPQ TNQKQGSDKR QQGWKSEKNL KFLLQKVLKQ  540
SDVGNLGRIV LPKKEAESHL PELETRDGMT IAMEDIGSSR VWNMRYRFWP NNKSRMYLLE  600
NTGDFVRVNG LQEGDFIVIY SDTKCGKYMI RGVKVRQPGA KMEGKKPARR NMRNMSFGGN  660
SSSLMPIKQA AR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-365306371108B3 domain-containing transcription factor FUS3
6j9b_D6e-365306371108B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D00511.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835771.10.0PREDICTED: B3 domain-containing transcription factor ABI3
TrEMBLA0A022S2070.0A0A022S207_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-72B3 family protein