PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.D00130.1.p
Common NameLOC105957980, MIMGU_mgv1a012435mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ERF
Protein Properties Length: 251aa    MW: 28165.2 Da    PI: 4.8735
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.D00130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-1966114355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +g+W+AeIrdp   gk  r++lg++ taeeAa+a+++ ++k++g
  Migut.D00130.1.p  66 YRGIRQRP-WGKWAAEIRDP---GKGVRVWLGTYNTAEEAARAYDREARKIRG 114
                       9*******.**********8...545************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.51265122IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2265123IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-3265123IPR001471AP2/ERF domain
SMARTSM003802.0E-3765128IPR001471AP2/ERF domain
PfamPF008473.2E-1266114IPR001471AP2/ERF domain
PRINTSPR003671.2E-116677IPR001471AP2/ERF domain
CDDcd000181.66E-3266123No hitNo description
PRINTSPR003671.2E-1188104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MCGGAILAGL IPRRGGVSSD VFWPTVFSAS DENPTPPPPK KSRFCTVGGH AAKGGVAKKK  60
QRKNLYRGIR QRPWGKWAAE IRDPGKGVRV WLGTYNTAEE AARAYDREAR KIRGKKAKVN  120
FPNEEQYDYD NYSCHYNIPN PAKRCRVEED YNEFNQLGFE MYDDDKFFYS VNNEGEVKPD  180
VDGGGGGDSK EAVVEFKAAE DEVQKLSEEL MAFENYMDFY QIPYLDGQSS APTNPPPETV  240
ELWSFDDVSD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2166122360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-2166122663ATERF1
3gcc_A4e-2166122663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.D00130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012837430.10.0PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLA0A022S3310.0A0A022S331_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-34ERF family protein