PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D00130.1.p | ||||||||
Common Name | LOC105957980, MIMGU_mgv1a012435mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 28165.2 Da PI: 4.8735 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.8e-19 | 66 | 114 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp gk r++lg++ taeeAa+a+++ ++k++g Migut.D00130.1.p 66 YRGIRQRP-WGKWAAEIRDP---GKGVRVWLGTYNTAEEAARAYDREARKIRG 114 9*******.**********8...545************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.512 | 65 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 65 | 123 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-32 | 65 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-37 | 65 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-12 | 66 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 66 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.66E-32 | 66 | 123 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 88 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MCGGAILAGL IPRRGGVSSD VFWPTVFSAS DENPTPPPPK KSRFCTVGGH AAKGGVAKKK 60 QRKNLYRGIR QRPWGKWAAE IRDPGKGVRV WLGTYNTAEE AARAYDREAR KIRGKKAKVN 120 FPNEEQYDYD NYSCHYNIPN PAKRCRVEED YNEFNQLGFE MYDDDKFFYS VNNEGEVKPD 180 VDGGGGGDSK EAVVEFKAAE DEVQKLSEEL MAFENYMDFY QIPYLDGQSS APTNPPPETV 240 ELWSFDDVSD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-21 | 66 | 122 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-21 | 66 | 122 | 6 | 63 | ATERF1 |
3gcc_A | 4e-21 | 66 | 122 | 6 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D00130.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012837430.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF071-like | ||||
TrEMBL | A0A022S331 | 0.0 | A0A022S331_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7118 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 2e-34 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.D00130.1.p |
Entrez Gene | 105957980 |