PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C01325.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 183aa MW: 20634.8 Da PI: 9.8454 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.9 | 1.3e-13 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i +++ r tf kR++g++KK +EL +LC++ev+ ii+ +g+ Migut.C01325.1.p 11 IADERTRRETFKKRKTGLFKKLNELKTLCNVEVCGIIMNGEGT 53 778899999*************************998876665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-14 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.68 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.77E-20 | 3 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-20 | 3 | 93 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-15 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MVRSKIRYEL IADERTRRET FKKRKTGLFK KLNELKTLCN VEVCGIIMNG EGTQSEVWPS 60 AHEASEVIQK FINLPSSSQT NNMTDQAGFL RQNLSRLSKN LGKETVKVQS LEKELLLVEC 120 LTKGEADVSN SKELHEMLRL LERKIGMIDR RIADLEPSSS NRVVGAKETN IEPQHGKGKQ 180 PL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C01325.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G9H1K6 | 6e-97 | A0A2G9H1K6_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8581 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-18 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Migut.C01325.1.p |