PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C01037.2.p
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 1082aa    MW: 121778 Da    PI: 8.911
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C01037.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.4e-06286307426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C++f r G C  G++C+F+H+
  Migut.C01037.2.p 286 PPCKDFIR-GDCTWGESCRFSHD 307
                       79******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.427204231IPR000571Zinc finger, CCCH-type
SMARTSM003560.011205230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4208231IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4282308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037282309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5283307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4287307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.751328354IPR000571Zinc finger, CCCH-type
SMARTSM003560.042329353IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1082 aa     Download sequence    Send to blast
MDERRKRKPM WGMEEETKHL SGTSENSSWM GSGHYHELSE SRTTTTQKSR DNSGWPTWES  60
IEENPTEPMN TSFKNAPEGK ERGGGKRYYD DVSPGFDGVE LRSHDHTREY DQSHSQRYLG  120
RGRSRSRSRV RGRSRSPSPS RGRERERERE RGSDRGRERR RGWSRSRSRS RTDGNARHYT  180
RSRSPIRDPR RQSYELSDRR SGPEKSSQIC RDLASGRCNR GSQCRFFHPR RDGGHMEDDT  240
TESWRSRAAD RSRIPRHSYD RGSRNDVSDP YYREEDQFVS RSRGAPPCKD FIRGDCTWGE  300
SCRFSHDGLG QKTRNASFDK DIDREPYKSV KPLCKYFAAG KCGKDNCWFS HENPNLDKVE  360
ARRGGDVTES RSPRYKSNRR SSPTWDDEPR ISDRRNHIGR SEPIANTDDL NYKDNKWNGP  420
TWDDATRNSD TLKHTGWGEP IVANATNTDN SHDDLNLSKV EGRRGDVTDT RSSHYKTDTW  480
NGPKWEDPTR ISEKPPGFGE PILATDNSHE EPSRAKAKGR RDEVIDSRSS HYKSNMWNGP  540
TWDDATGVSD TLNPTGWGEP NRAKTTHTDD SYEDPDRNKV KSRRDEVTGG RSSHDKSSRW  600
NGPTRGDATG ISDTPKSTGW GEPILAKATH TDDSYEDRNP SNVKGRRGEA IDNRSSHHKS  660
NRWNGPMWDD ATGVSDTLQP SGWGEPIPAI ATNTVHSDWR EGTGISVNSE KQPSLPVESV  720
SYGHGQDALL ENQDFAIKAL QQKYFPASSI QQQHGTALEN NQTNTFGSDV PAEQKEVRYT  780
TDPILFSGQT FNQNDGNNVA GNLISHEGQN IFCPDPSNGL ITDLNGPDTH TVGQMDVQTQ  840
IINNRKAVQS SGLLDAKVLQ LLTSEQRSNT GTNSPVTNAG QQVPPSPLVK ESVVRPNPGA  900
ASFDLSHSMG HDRDNTEKRN LAQGTEQKNQ MQLKLSSPFP VVSTGVDRLN VKHPQSPRPR  960
QEEAVPNSEN AIGDQNKSGL ENKPSENLDG MNKDEKALFI FKNALVEFVK ELLKPAWKEG  1020
RMSRDAHKTV VKKVVDKVSG AIPVDHIPKT QDKVDQYLSV SKPKIAKLVQ AYVERSQKAD  1080
P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
128ERRKRKP
2122130RSRSRSRVR
3140150RGRERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.C01037.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829563.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like
TrEMBLA0A022PPT20.0A0A022PPT2_ERYGU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-15C3H family protein