PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.C00546.1.p | ||||||||
Common Name | LOC105971301, MIMGU_mgv1a015510mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | ERF | ||||||||
Protein Properties | Length: 156aa MW: 17050.9 Da PI: 9.4315 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5.1e-17 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g Migut.C00546.1.p 30 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 79 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.997 | 30 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-35 | 30 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-21 | 30 | 88 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.39E-26 | 31 | 88 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 31 | 42 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-10 | 31 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 31 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 69 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MEGICCTTSS NSSSSTENPS KRKQRQPDKP YRGIRMRKWG KWVAEIREPN KRSRIWLGSY 60 SSPVAAARAY DTAVFYLRGP SARLNFPDCA IEDGGGGGLS DLSAAAIRKK ATEVGARVDA 120 LQAADRPRPD SNNPGRVYDK PDLNEYPTPE TSEDN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-15 | 29 | 87 | 4 | 63 | ATERF1 |
3gcc_A | 7e-15 | 29 | 87 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00188 | DAP | Transfer from AT1G46768 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.C00546.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851602.1 | 1e-111 | PREDICTED: ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | Q8LC30 | 4e-49 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A022QCX4 | 1e-109 | A0A022QCX4_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 3e-47 | related to AP2 1 |
Link Out ? help Back to Top | |
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Phytozome | Migut.C00546.1.p |
Entrez Gene | 105971301 |
Publications ? help Back to Top | |||
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